Variant report

Variant	rs6712652
Chromosome Location	chr2:212226177-212226178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12467225	0.85[JPT][hapmap]
rs12468497	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12472934	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1595067	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16846013	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs1836734	0.82[AMR][1000 genomes]
rs1836735	0.83[AMR][1000 genomes]
rs1971802	0.82[AMR][1000 genomes]
rs2887992	0.81[AMR][1000 genomes]
rs60598560	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs60650708	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs62180134	0.83[AMR][1000 genomes]
rs62180135	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212214200-212232000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:212222800-212227200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:212223000-212227000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:212223200-212227400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:212224000-212227400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:212225600-212226200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr2:212225800-212226200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr2:212225800-212226200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr2:212225800-212226600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:212225800-212229800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:212225800-212232000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr2:212226000-212226200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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