Variant report

Variant	rs60650708
Chromosome Location	chr2:212231779-212231780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12472934	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1579599	0.95[ASN][1000 genomes]
rs1579600	0.89[ASN][1000 genomes]
rs1595064	0.89[ASN][1000 genomes]
rs1595067	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16845990	0.90[ASN][1000 genomes]
rs16846013	0.87[AFR][1000 genomes]
rs16846048	0.83[ASN][1000 genomes]
rs1836737	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1971803	0.94[ASN][1000 genomes]
rs2371263	0.94[ASN][1000 genomes]
rs3791682	0.87[ASN][1000 genomes]
rs60598560	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62180104	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6712652	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7559343	0.97[ASN][1000 genomes]
rs7603166	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212214200-212232000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:212225800-212232000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:212227200-212232400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:212230200-212232400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:212230400-212232400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:212231000-212232200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:212231000-212232400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:212231000-212232600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:212231000-212232600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links