Variant report

Variant	rs4673613
Chromosome Location	chr2:212264642-212264643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212263390..212265128-chr2:212269573..212272489,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10932374	0.90[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap]
rs11900036	0.84[CEU][hapmap]
rs12467225	0.89[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs12471583	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs13431425	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1595064	0.82[JPT][hapmap]
rs1595066	0.90[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap]
rs16825008	0.87[MEX][hapmap]
rs16845990	0.82[JPT][hapmap]
rs16846013	0.89[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap]
rs16846048	0.85[JPT][hapmap]
rs16846049	0.99[ASN][1000 genomes]
rs16846100	0.81[MEX][hapmap]
rs16846127	0.87[MEX][hapmap]
rs16846133	0.87[MEX][hapmap]
rs16846140	0.85[MEX][hapmap]
rs1836717	0.87[MEX][hapmap]
rs2033647	0.87[MEX][hapmap]
rs2289086	0.84[CEU][hapmap]
rs3791687	0.86[ASN][1000 genomes]
rs3791691	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3791696	0.95[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];0.89[ASN][1000 genomes]
rs3791697	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3791699	0.88[ASN][1000 genomes]
rs3791700	0.80[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs3791701	0.83[ASN][1000 genomes]
rs3791703	0.88[CEU][hapmap]
rs3791704	0.80[EUR][1000 genomes]
rs3791707	0.87[MEX][hapmap]
rs3791708	0.87[MEX][hapmap]
rs4673614	0.88[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6749560	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv584314	chr2:212238982-212292521	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
4	nsv460065	chr2:212244520-212276710	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
5	nsv584315	chr2:212244520-212276710	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212258600-212272200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:212261800-212268600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:212264400-212265200	Enhancers	Pancreatic Islets	Pancreatic Islet

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