Variant report

Variant	rs2033647
Chromosome Location	chr2:212302127-212302128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:212300211..212302596-chr2:212303627..212305384,3	MCF-7	breast:
2	chr2:212290669..212293299-chr2:212299523..212302386,3	MCF-7	breast:
3	chr2:212138119..212140706-chr2:212301940..212304830,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10932374	0.86[MEX][hapmap]
rs16825005	0.86[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs16825008	0.87[CEU][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16846013	0.93[MEX][hapmap]
rs16846100	0.86[CHB][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];0.81[TSI][hapmap]
rs16846127	0.90[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.86[ASN][1000 genomes]
rs16846128	0.90[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs16846133	0.95[CHB][hapmap];0.87[CHD][hapmap];0.84[GIH][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap];0.87[ASN][1000 genomes]
rs16846136	0.95[CHB][hapmap];0.82[CHD][hapmap];0.80[GIH][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16846140	0.95[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1836716	0.87[ASN][1000 genomes]
rs1836717	0.95[CHB][hapmap];0.82[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3791691	0.86[MEX][hapmap]
rs3791696	0.93[MEX][hapmap]
rs3791702	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs3791704	0.84[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs3791706	0.85[ASN][1000 genomes]
rs3791707	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.85[ASN][1000 genomes]
rs3791708	0.90[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.85[ASN][1000 genomes]
rs3791709	0.90[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs3791710	0.95[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs4673613	0.87[MEX][hapmap]
rs4673616	0.90[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4673617	0.84[ASN][1000 genomes]
rs55901919	0.86[ASN][1000 genomes]
rs62178762	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6435622	0.92[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73985439	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7591494	0.95[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875778	chr2:212297838-212360994	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212288200-212302400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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