Variant report

Variant	rs73985439
Chromosome Location	chr2:212299249-212299250
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16825005	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs16825008	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16846100	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16846127	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16846128	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16846133	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16846136	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16846140	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1836716	0.91[ASN][1000 genomes]
rs1836717	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2033647	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3791700	0.81[AMR][1000 genomes]
rs3791702	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3791704	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3791706	0.89[ASN][1000 genomes]
rs3791707	0.86[ASN][1000 genomes]
rs3791708	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3791709	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3791710	0.89[ASN][1000 genomes]
rs4673616	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4673617	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs55901919	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62178762	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6435622	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7591494	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv520702	chr2:212292521-212299979	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv875778	chr2:212297838-212360994	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212281600-212301200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:212288200-212302400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links