Variant report

Variant	rs3794125
Chromosome Location	chr11:35172109-35172110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35166380..35169022-chr11:35170596..35172915,2	MCF-7	breast:
2	chr11:35170246..35172817-chr11:35174979..35176507,2	MCF-7	breast:
3	chr11:35163163..35167316-chr11:35171190..35174236,4	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12280381	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs16926995	1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[ASN][1000 genomes]
rs17367609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367744	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17445923	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.90[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17445972	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1981153	0.96[ASN][1000 genomes]
rs1981154	0.98[ASN][1000 genomes]
rs3794118	0.98[ASN][1000 genomes]
rs7938811	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs7952493	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs7952514	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv541000	chr11:35053717-35185471	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv508623	chr11:35094933-35203363	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv541002	chr11:35101282-35224624	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv541003	chr11:35122694-35261451	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
12	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35161200-35197400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
2	chr11:35163400-35173000	Weak transcription	Left Ventricle	heart
3	chr11:35163400-35178400	Weak transcription	Psoas Muscle	Psoas
4	chr11:35163800-35183400	Genic enhancers	Primary B cells from peripheral blood	blood
5	chr11:35164400-35172200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:35165800-35172800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:35165800-35172800	Weak transcription	Right Atrium	heart
8	chr11:35166000-35175000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr11:35166200-35172600	Weak transcription	Placenta	Placenta
10	chr11:35166200-35173200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:35166600-35179000	Weak transcription	HUVEC	blood vessel
12	chr11:35167000-35174800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:35167200-35179400	Weak transcription	Right Ventricle	heart
14	chr11:35167200-35179800	Weak transcription	Fetal Lung	lung
15	chr11:35167400-35179200	Weak transcription	Colonic Mucosa	Colon
16	chr11:35167400-35179200	Weak transcription	Gastric	stomach
17	chr11:35167400-35185800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr11:35167600-35179200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:35167600-35184200	Genic enhancers	Primary T cells fromperipheralblood	blood
20	chr11:35167600-35186200	Genic enhancers	NHDF-Ad	bronchial
21	chr11:35167600-35186400	Genic enhancers	HMEC	breast
22	chr11:35167800-35178800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:35167800-35185800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:35168000-35173400	Weak transcription	Dnd41	blood
25	chr11:35168000-35175400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:35168000-35176400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr11:35168200-35172400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:35168200-35172800	Weak transcription	HSMMtube	muscle
29	chr11:35168200-35179200	Genic enhancers	NHEK	skin
30	chr11:35168800-35172600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:35168800-35179000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr11:35169000-35172200	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr11:35169000-35172800	Weak transcription	Esophagus	oesophagus
34	chr11:35169000-35172800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr11:35169000-35173200	Weak transcription	Duodenum Mucosa	Duodenum
36	chr11:35169000-35174000	Weak transcription	Stomach Mucosa	stomach
37	chr11:35169000-35179200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:35169000-35179400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr11:35169200-35172800	Weak transcription	Lung	lung
40	chr11:35169200-35173200	Weak transcription	Spleen	Spleen
41	chr11:35169200-35175200	Strong transcription	Primary hematopoietic stem cells	blood
42	chr11:35169200-35175600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr11:35169200-35179600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:35169800-35172800	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr11:35169800-35173000	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:35169800-35179200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr11:35170000-35172600	Weak transcription	Aorta	Aorta
48	chr11:35170000-35172800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:35170000-35172800	Weak transcription	Pancreas	Pancrea
50	chr11:35170000-35173000	Weak transcription	H9 Cell Line	embryonic stem cell

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