Variant report

Variant	rs3798436
Chromosome Location	chr6:76578655-76578656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs11963710	0.81[ASN][1000 genomes]
rs11964201	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11967411	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11968058	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11968226	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11969264	0.89[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12660075	1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs12660330	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12660493	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12662248	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12662475	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12662565	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12662672	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12662718	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12662824	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12662879	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12663203	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12663535	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12664049	0.86[JPT][hapmap]
rs12664146	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12664721	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12664742	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12665404	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13205059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16879451	1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2273858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2295937	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3778009	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3798425	0.86[JPT][hapmap]
rs3798433	0.86[JPT][hapmap]
rs3798445	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3798450	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3798451	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3798452	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3798453	1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3798456	1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3798457	1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs56251027	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59710688	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60360183	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61620194	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67182025	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654752	0.80[ASN][1000 genomes]
rs72654753	0.83[ASN][1000 genomes]
rs72654754	0.83[ASN][1000 genomes]
rs72654755	0.81[ASN][1000 genomes]
rs72654756	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72654757	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72654758	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72654759	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654760	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654761	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654762	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72654763	0.86[ASN][1000 genomes]
rs72654764	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654765	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654766	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654767	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654769	0.86[ASN][1000 genomes]
rs72654770	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654771	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654773	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654775	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654776	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654779	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72654781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72654783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72654784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72654785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72654786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72654787	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72654788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72654789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72654790	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72654791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72654792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72654793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72674543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72674544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72674545	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72674546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73751021	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73751022	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73751024	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7761217	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9443187	1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9443191	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9443192	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9447543	1.00[CHB][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9447544	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9447545	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9447546	1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9447549	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9447552	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9447555	1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019328	chr6:76154751-76604197	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv538314	chr6:76154751-76604197	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv1021090	chr6:76306100-76759397	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv538318	chr6:76306100-76759397	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1032961	chr6:76343575-76788852	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv932201	chr6:76365548-77219650	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv1028340	chr6:76410921-76960225	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv538319	chr6:76410921-76960225	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
9	esv2618363	chr6:76578343-76579920	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76541000-76590600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr6:76543000-76615000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:76544000-76583200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:76544400-76603800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:76552200-76592400	Weak transcription	HSMM	muscle
6	chr6:76552600-76592400	Weak transcription	Psoas Muscle	Psoas
7	chr6:76560000-76585800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:76560400-76583200	Weak transcription	Osteobl	bone
9	chr6:76562400-76599800	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:76562800-76583400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:76563000-76580200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:76563000-76585400	Weak transcription	NHDF-Ad	bronchial
13	chr6:76563400-76602800	Weak transcription	Small Intestine	intestine
14	chr6:76566200-76604600	Weak transcription	Right Ventricle	heart
15	chr6:76567000-76604400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:76567600-76584000	Weak transcription	Fetal Heart	heart
17	chr6:76567600-76598600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:76567600-76604200	Weak transcription	NHLF	lung
19	chr6:76570400-76580400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:76571200-76592400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr6:76571400-76582200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:76571400-76583400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:76573000-76583400	Weak transcription	Aorta	Aorta
24	chr6:76573000-76584000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:76573000-76597800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:76573000-76624000	Weak transcription	Placenta	Placenta
27	chr6:76573200-76604200	Weak transcription	Colonic Mucosa	Colon
28	chr6:76573400-76592800	Weak transcription	Stomach Mucosa	stomach
29	chr6:76573600-76583000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:76573600-76606200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:76573800-76583400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:76573800-76607200	Weak transcription	Gastric	stomach
33	chr6:76573800-76608400	Weak transcription	Esophagus	oesophagus
34	chr6:76574000-76583400	Weak transcription	NH-A	brain
35	chr6:76574000-76584600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:76574200-76583200	Weak transcription	Brain Angular Gyrus	brain
37	chr6:76574400-76583000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:76574400-76583200	Weak transcription	Ovary	ovary
39	chr6:76574400-76583400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:76574400-76632600	Weak transcription	Spleen	Spleen
41	chr6:76574800-76582800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr6:76574800-76583400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:76575400-76583400	Weak transcription	Fetal Stomach	stomach
44	chr6:76575600-76586400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr6:76576000-76604000	Weak transcription	Fetal Brain Female	brain
46	chr6:76576600-76582800	Weak transcription	HSMMtube	muscle
47	chr6:76576600-76583400	Weak transcription	Brain Substantia Nigra	brain
48	chr6:76576600-76584200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr6:76577200-76580000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:76577200-76581000	Weak transcription	Lung	lung

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