Variant report

Variant rs3778009
Chromosome Location chr6:76552035-76552036
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:76520200-76576400 Weak transcription iPS-20b Cell Line embryonic stem cell
2 chr6:76521800-76571000 Weak transcription Gastric stomach
3 chr6:76522000-76558800 Weak transcription Ovary ovary
4 chr6:76522200-76554200 Weak transcription Skeletal Muscle Male skeletal muscle
5 chr6:76522600-76559000 Weak transcription Fetal Kidney kidney
6 chr6:76523800-76569000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr6:76527200-76558800 Weak transcription Small Intestine intestine
8 chr6:76532800-76553000 Weak transcription HepG2 liver
9 chr6:76533200-76559400 Weak transcription Colon Smooth Muscle Colon
10 chr6:76534200-76572400 Weak transcription Brain Anterior Caudate brain
11 chr6:76534400-76556600 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr6:76538200-76559200 Weak transcription Pancreas Pancrea
13 chr6:76539400-76572400 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr6:76540800-76552800 Weak transcription Rectal Smooth Muscle rectum
15 chr6:76541000-76590600 Weak transcription iPS-18 Cell Line embryonic stem cell
16 chr6:76541200-76572600 Weak transcription HSMMtube muscle
17 chr6:76541400-76554600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr6:76541400-76558400 Weak transcription Stomach Mucosa stomach
19 chr6:76541400-76559200 Weak transcription Osteobl bone
20 chr6:76541400-76572400 Weak transcription Brain Cingulate Gyrus brain
21 chr6:76541600-76553600 Weak transcription H9 Cell Line embryonic stem cell
22 chr6:76541600-76558800 Weak transcription Muscle Satellite Cultured Cells --
23 chr6:76541600-76559400 Weak transcription NH-A brain
24 chr6:76541800-76558600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr6:76543000-76558800 Weak transcription Left Ventricle heart
26 chr6:76543000-76568800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr6:76543000-76569200 Weak transcription Lung lung
28 chr6:76543000-76615000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
29 chr6:76543200-76566600 Weak transcription HMEC breast
30 chr6:76543800-76559400 Weak transcription NHDF-Ad bronchial
31 chr6:76544000-76583200 Weak transcription Cortex derived primary cultured neurospheres brain
32 chr6:76544200-76572600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr6:76544400-76558800 Weak transcription Sigmoid Colon Sigmoid Colon
34 chr6:76544400-76559200 Weak transcription Fetal Stomach stomach
35 chr6:76544400-76572600 Weak transcription Aorta Aorta
36 chr6:76544400-76572600 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr6:76544400-76603800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr6:76545800-76566800 Weak transcription HUES48 Cell Line embryonic stem cell
39 chr6:76547400-76562400 Weak transcription Rectal Mucosa Donor 29 rectum
40 chr6:76547400-76572600 Weak transcription Stomach Smooth Muscle stomach
41 chr6:76548400-76552800 Strong transcription Fetal Intestine Large intestine
42 chr6:76548800-76552600 Weak transcription Right Ventricle heart
43 chr6:76549200-76552800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
44 chr6:76549200-76553200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr6:76549400-76553000 Strong transcription Duodenum Mucosa Duodenum
46 chr6:76549800-76552200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr6:76549800-76552800 Strong transcription Breast Myoepithelial Primary Cells Breast
48 chr6:76550200-76552200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr6:76550200-76552800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr6:76550200-76552800 Strong transcription Rectal Mucosa Donor 31 rectum

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