Variant report

Variant	rs3800652
Chromosome Location	chr7:137431422-137431423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137429891..137431516-chr7:137441262..137442880,2	K562	blood:
2	chr7:137424293..137427075-chr7:137431078..137432741,2	K562	blood:
3	chr7:137431068..137433961-chr7:137443285..137445463,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10215033	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10240406	0.94[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10257746	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10262883	1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10263086	0.94[CHB][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10269716	1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1559489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169427	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059320	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2113425	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778802	0.88[MEX][hapmap];0.92[TSI][hapmap];0.82[YRI][hapmap];0.90[EUR][1000 genomes]
rs3778804	0.94[CHB][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3800638	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs3800639	0.94[CHB][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3800640	0.94[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3800642	1.00[CHB][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3800643	1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55953418	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57538683	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57957290	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6467715	1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73460689	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7779850	1.00[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap];0.94[MEX][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7803175	0.94[CHB][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7806517	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137413400-137432200	Weak transcription	Aorta	Aorta
2	chr7:137416600-137438000	Weak transcription	NH-A	brain
3	chr7:137419400-137438200	Weak transcription	HSMM	muscle
4	chr7:137419600-137437800	Weak transcription	HSMMtube	muscle
5	chr7:137419800-137438000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:137429800-137431600	Strong transcription	Muscle Satellite Cultured Cells	--
7	chr7:137430200-137438600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:137430400-137432000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:137430600-137432600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:137430800-137432000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:137430800-137432200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr7:137431000-137432000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr7:137431000-137432200	Strong transcription	Osteobl	bone
14	chr7:137431000-137432400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr7:137431000-137432600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr7:137431000-137433400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr7:137431000-137434200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr7:137431200-137432800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:137431400-137432200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr7:137431400-137432400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:137431400-137432600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:137431400-137433400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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