Variant report

Variant	rs3778802
Chromosome Location	chr7:137403232-137403233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:137403100-137403250	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137400906..137403879-chr7:137418023..137420463,3	K562	blood:

Variant related genes	Relation type
ENSG00000230383	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10215033	0.82[EUR][1000 genomes]
rs10240406	1.00[CEU][hapmap];0.89[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.88[EUR][1000 genomes]
rs10257746	1.00[CEU][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs10262883	1.00[CEU][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs10263086	0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs10269716	1.00[CEU][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs1559489	0.82[EUR][1000 genomes]
rs17169427	0.90[EUR][1000 genomes]
rs2059320	0.83[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.82[EUR][1000 genomes]
rs3778804	1.00[CEU][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs3800638	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3800639	1.00[CEU][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs3800640	1.00[CEU][hapmap];0.89[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.88[EUR][1000 genomes]
rs3800642	1.00[CEU][hapmap];0.85[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.88[EUR][1000 genomes]
rs3800643	1.00[CEU][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.97[EUR][1000 genomes]
rs3800652	0.88[MEX][hapmap];0.92[TSI][hapmap];0.82[YRI][hapmap];0.90[EUR][1000 genomes]
rs4366029	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs55953418	0.97[EUR][1000 genomes]
rs57538683	0.97[EUR][1000 genomes]
rs57957290	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58701346	0.80[EUR][1000 genomes]
rs6467715	1.00[CEU][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs73460689	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7779850	1.00[CEU][hapmap];0.82[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.88[EUR][1000 genomes]
rs7803175	1.00[CEU][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs7806517	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137399400-137403600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:137400600-137403800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:137400600-137404000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:137400800-137403400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:137400800-137404800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:137400800-137405400	Weak transcription	Right Atrium	heart
7	chr7:137401600-137404000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:137401800-137403600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:137401800-137404000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr7:137401800-137404400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:137402200-137403600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr7:137402400-137403400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:137402400-137403600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:137402400-137403600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr7:137402400-137403600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr7:137402600-137403400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:137402600-137403400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:137402600-137403400	Enhancers	HSMM	muscle
19	chr7:137402600-137403600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:137402800-137403400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:137402800-137403400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:137402800-137403400	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr7:137402800-137403600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:137403000-137403400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr7:137403000-137403600	Enhancers	NH-A	brain
26	chr7:137403000-137404000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:137403000-137404200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:137403200-137403400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
29	chr7:137403200-137403400	Enhancers	Aorta	Aorta
30	chr7:137403200-137403600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr7:137403200-137403600	Enhancers	Brain Anterior Caudate	brain
32	chr7:137403200-137403800	Genic enhancers	Osteobl	bone
33	chr7:137403200-137404200	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr7:137403200-137416200	Weak transcription	HSMMtube	muscle

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