Variant report

Variant	rs3800638
Chromosome Location	chr7:137404068-137404069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10215033	0.82[EUR][1000 genomes]
rs10240406	0.88[EUR][1000 genomes]
rs10257746	0.88[EUR][1000 genomes]
rs10262883	0.88[EUR][1000 genomes]
rs10263086	0.88[EUR][1000 genomes]
rs10269716	0.88[EUR][1000 genomes]
rs1559489	0.82[EUR][1000 genomes]
rs17169427	0.90[EUR][1000 genomes]
rs2059320	0.82[EUR][1000 genomes]
rs3778802	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3778804	0.88[EUR][1000 genomes]
rs3800639	0.88[EUR][1000 genomes]
rs3800640	0.88[EUR][1000 genomes]
rs3800642	0.88[EUR][1000 genomes]
rs3800643	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs3800652	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4366029	0.80[EUR][1000 genomes]
rs55953418	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs57538683	0.97[EUR][1000 genomes]
rs57957290	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58701346	0.80[EUR][1000 genomes]
rs6467715	0.88[EUR][1000 genomes]
rs73460689	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7779850	0.88[EUR][1000 genomes]
rs7803175	0.88[EUR][1000 genomes]
rs7806517	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137400800-137404800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr7:137400800-137405400	Weak transcription	Right Atrium	heart
3	chr7:137401800-137404400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:137403000-137404200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:137403200-137404200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr7:137403200-137416200	Weak transcription	HSMMtube	muscle
7	chr7:137403400-137404400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:137403400-137404800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr7:137403400-137404800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:137403400-137407800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:137403400-137412200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:137403400-137413000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:137403400-137413200	Weak transcription	Aorta	Aorta
14	chr7:137403400-137416000	Weak transcription	HSMM	muscle
15	chr7:137403600-137407800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:137403600-137408000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:137403800-137409800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr7:137403800-137415800	Weak transcription	Osteobl	bone
19	chr7:137404000-137406400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:137404000-137409800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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