Variant report

Variant	rs3801373
Chromosome Location	chr7:121532327-121532328
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121526936..121528958-chr7:121532150..121533676,2	K562	blood:
2	chr7:121529232..121531961-chr7:121532248..121534152,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12667535	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12669706	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12672519	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1916885	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2024251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2191783	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3801374	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3801377	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56265902	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6971645	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73229136	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9641678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121515600-121543600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121522600-121550000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:121523200-121539800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:121523200-121552600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:121527400-121540600	Weak transcription	Fetal Brain Female	brain
6	chr7:121528000-121550000	Weak transcription	Brain Germinal Matrix	brain
7	chr7:121530000-121532400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:121530600-121539600	Weak transcription	NHEK	skin
9	chr7:121531200-121532800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:121531200-121533200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:121531200-121539600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:121531200-121558200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:121531600-121532600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:121531600-121533200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:121531800-121532400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:121531800-121533600	Enhancers	Fetal Brain Male	brain
17	chr7:121532000-121533200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:121532000-121533200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr7:121532200-121533200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr7:121532200-121533200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:121532200-121533400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:121532200-121533400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:121532200-121534000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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