Variant report

Variant	rs56265902
Chromosome Location	chr7:121549474-121549475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12667535	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12669706	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12672519	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1916885	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2024251	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2191783	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3801373	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801374	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3801377	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6946211	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6971645	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73229136	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73229144	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9641678	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121522600-121550000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121523200-121552600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:121528000-121550000	Weak transcription	Brain Germinal Matrix	brain
4	chr7:121531200-121558200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:121534800-121554200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:121541000-121552000	Weak transcription	NHEK	skin
7	chr7:121541200-121552200	Weak transcription	Fetal Brain Female	brain
8	chr7:121542200-121553200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:121545600-121551400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:121545600-121571400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:121545800-121549800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:121546000-121550000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:121546000-121553600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:121549000-121550000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:121549200-121549600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:121549200-121549600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:121549200-121550200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr7:121549200-121550600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
19	chr7:121549400-121550400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:121549400-121552200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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