Variant report

Variant	rs6971645
Chromosome Location	chr7:121542081-121542082
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12667535	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12669706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12672519	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1916885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024251	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2191783	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3757544	0.81[MKK][hapmap]
rs3801373	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3801374	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801377	1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3801380	0.83[CEU][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap]
rs56265902	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6946211	0.89[CHB][hapmap];0.81[CHD][hapmap];0.84[JPT][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.80[ASN][1000 genomes]
rs73229136	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73229144	0.80[ASN][1000 genomes]
rs740965	0.83[CEU][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap]
rs9641678	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121515600-121543600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121522600-121550000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:121523200-121552600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:121528000-121550000	Weak transcription	Brain Germinal Matrix	brain
5	chr7:121531200-121558200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:121532400-121549200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:121532800-121543000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:121534800-121554200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:121537400-121542200	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:121537600-121542200	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:121537600-121545200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:121538400-121542600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:121538600-121542400	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:121539600-121542200	Enhancers	Fetal Brain Male	brain
15	chr7:121540400-121543800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:121540600-121545400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:121540800-121545200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:121541000-121552000	Weak transcription	NHEK	skin
19	chr7:121541200-121546600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:121541200-121552200	Weak transcription	Fetal Brain Female	brain
21	chr7:121541400-121549000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr7:121541800-121542200	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr7:121542000-121542200	Enhancers	H1 Cell Line	embryonic stem cell
24	chr7:121542000-121543200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links