Variant report

Variant	rs3757544
Chromosome Location	chr7:121601824-121601825
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1147499	0.86[JPT][hapmap]
rs1147500	0.89[GIH][hapmap];0.86[JPT][hapmap]
rs1147503	0.86[JPT][hapmap]
rs1196474	0.90[GIH][hapmap]
rs1196498	0.85[ASN][1000 genomes]
rs1196500	0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12055989	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12056133	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206384	1.00[JPT][hapmap]
rs1206387	0.90[GIH][hapmap]
rs1211982	0.85[ASN][1000 genomes]
rs17143947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1916872	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2177510	0.86[JPT][hapmap]
rs3801377	0.81[MKK][hapmap]
rs6971645	0.81[MKK][hapmap]
rs940422	0.90[GIH][hapmap];0.82[JPT][hapmap]
rs9641678	0.81[MKK][hapmap]
rs9641680	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121582600-121617600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:121592000-121609600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:121596000-121618400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:121600000-121602400	Enhancers	NHEK	skin
5	chr7:121600600-121602000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:121600800-121602000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:121600800-121602000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:121600800-121602200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:121600800-121602200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:121601000-121602000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:121601000-121602000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
12	chr7:121601200-121602000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:121601200-121602000	Enhancers	Fetal Brain Female	brain
14	chr7:121601200-121602200	Enhancers	HMEC	breast
15	chr7:121601400-121602000	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:121601400-121602200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:121601400-121602200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:121601400-121602400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:121601600-121606000	Weak transcription	Fetal Brain Male	brain
20	chr7:121601600-121628000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:121601800-121602000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:121601800-121602200	Enhancers	NH-A	brain
23	chr7:121601800-121602200	Enhancers	NHDF-Ad	bronchial
24	chr7:121601800-121603200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr7:121601800-121603200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:121601800-121603400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr7:121601800-121604800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr7:121601800-121607200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:121601800-121625600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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