Variant report

Variant	rs940422
Chromosome Location	chr7:121664914-121664915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10253893	0.87[ASN][1000 genomes]
rs1147488	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1147499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147500	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1196474	0.81[GIH][hapmap]
rs1196498	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1196500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1196502	0.90[GIH][hapmap]
rs1206384	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1206386	0.84[ASN][1000 genomes]
rs1206387	0.81[GIH][hapmap]
rs1211982	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12669983	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap]
rs12671513	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs12674287	0.83[ASN][1000 genomes]
rs17143947	0.82[JPT][hapmap]
rs1860721	0.82[JPT][hapmap]
rs1916872	0.82[CHB][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap]
rs2215359	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap]
rs2268074	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs28579799	0.87[ASN][1000 genomes]
rs28730482	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3757544	0.90[GIH][hapmap];0.82[JPT][hapmap]
rs73440967	0.87[ASN][1000 genomes]
rs940423	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv967495	chr7:121660234-121666665	Strong transcription Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121634400-121706000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121651200-121717600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:121652200-121679000	Weak transcription	NHEK	skin
4	chr7:121652400-121683200	Weak transcription	Brain Germinal Matrix	brain
5	chr7:121653800-121670200	Weak transcription	Fetal Brain Male	brain
6	chr7:121653800-121672600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:121653800-121673600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:121654000-121672200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:121654000-121672400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:121654000-121673200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:121654000-121675400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:121654000-121675600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:121654000-121679000	Weak transcription	Fetal Brain Female	brain
14	chr7:121654000-121679400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:121654200-121671200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:121655600-121699000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:121662200-121666600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:121663800-121705600	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:121664000-121665200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:121664000-121665400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:121664000-121669000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:121664600-121668200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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