Variant report

Variant	rs1916872
Chromosome Location	chr7:121614326-121614327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1147488	0.82[CHB][hapmap]
rs1147499	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs1147500	0.82[CHB][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap]
rs1147503	0.82[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1196474	0.90[GIH][hapmap]
rs1196498	0.93[ASN][1000 genomes]
rs1196500	0.89[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12055989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12056133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1206384	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1206387	0.90[GIH][hapmap]
rs1211982	0.93[ASN][1000 genomes]
rs12669983	0.82[CHB][hapmap]
rs12671513	0.82[CHB][hapmap]
rs17143947	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1860721	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2177510	0.86[JPT][hapmap]
rs2215359	0.82[CHB][hapmap]
rs2268074	0.82[CHB][hapmap]
rs3757544	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs940422	0.82[CHB][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap]
rs9641680	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121582600-121617600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:121596000-121618400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:121601600-121628000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:121601800-121625600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:121602000-121614600	Weak transcription	Fetal Brain Female	brain
6	chr7:121602400-121618200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:121603400-121631400	Weak transcription	NHEK	skin
8	chr7:121603600-121614800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:121604000-121616600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:121605800-121627600	Weak transcription	Brain Germinal Matrix	brain
11	chr7:121606800-121614800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr7:121607400-121619400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr7:121607800-121614600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:121607800-121617400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:121607800-121625400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:121609600-121614600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr7:121609800-121614400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:121611200-121618400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:121611400-121618000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:121611600-121621600	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr7:121612400-121614800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:121612600-121629200	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr7:121613200-121635000	Weak transcription	Fetal Brain Male	brain
24	chr7:121613600-121619800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:121613600-121620000	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr7:121613800-121615600	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr7:121613800-121624000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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