Variant report

Variant	rs1196500
Chromosome Location	chr7:121630976-121630977
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1147488	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1147499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1147500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1147503	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196474	0.81[GIH][hapmap]
rs1196497	0.96[AFR][1000 genomes]
rs1196498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1196502	1.00[GIH][hapmap]
rs12055989	0.85[ASN][1000 genomes]
rs12056133	0.83[ASN][1000 genomes]
rs1206384	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1206387	0.81[GIH][hapmap]
rs1211982	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12669983	1.00[CHB][hapmap]
rs12671513	1.00[CHB][hapmap]
rs17143947	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1860721	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1916872	0.89[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2177510	0.86[JPT][hapmap]
rs2215359	1.00[CHB][hapmap]
rs2268074	1.00[CHB][hapmap]
rs3757544	0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs940422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs940423	0.85[EUR][1000 genomes]
rs9641680	0.85[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121603400-121631400	Weak transcription	NHEK	skin
2	chr7:121613200-121635000	Weak transcription	Fetal Brain Male	brain
3	chr7:121614400-121633200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:121618600-121632800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:121618800-121633800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:121619800-121633600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:121624000-121647800	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:121625000-121635200	Weak transcription	Brain Substantia Nigra	brain
9	chr7:121625000-121650800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:121626000-121631800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:121626000-121650600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:121626000-121651000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:121626400-121650400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:121627800-121633400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:121627800-121636600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:121627800-121650600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:121628200-121631800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:121628200-121650000	Weak transcription	Brain Germinal Matrix	brain
19	chr7:121628600-121631800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:121628800-121631800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:121629000-121631200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:121629000-121635600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:121629000-121636800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr7:121629000-121650000	Weak transcription	Fetal Brain Female	brain
25	chr7:121629200-121631400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr7:121630800-121633200	Strong transcription	HUES64 Cell Line	embryonic stem cell

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