Variant report

Variant	rs12055989
Chromosome Location	chr7:121579915-121579916
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1196498	0.85[ASN][1000 genomes]
rs1196500	0.85[ASN][1000 genomes]
rs12056133	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1211982	0.85[ASN][1000 genomes]
rs17143947	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860721	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1916872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3757544	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9641680	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121571600-121597400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:121571800-121601200	Weak transcription	Esophagus	oesophagus
3	chr7:121574000-121582400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:121574200-121581200	Weak transcription	Brain Germinal Matrix	brain
5	chr7:121575600-121581000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:121576600-121582800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:121577000-121582400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:121577800-121580800	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:121577800-121581000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:121578400-121580200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:121578400-121580200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:121578400-121582400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:121578400-121582600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:121578600-121582800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:121578600-121583000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr7:121578800-121580200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr7:121578800-121583000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:121579000-121583000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr7:121579000-121583000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:121579200-121582200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr7:121579400-121580800	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr7:121579400-121583000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr7:121579400-121583000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr7:121579400-121585000	Weak transcription	Fetal Brain Male	brain
25	chr7:121579600-121580000	Weak transcription	NHEK	skin
26	chr7:121579600-121580800	Weak transcription	Fetal Brain Female	brain
27	chr7:121579800-121580400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr7:121579800-121580400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:121579800-121581000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr7:121579800-121581600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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