Variant report

Variant	rs1211982
Chromosome Location	chr7:121637168-121637169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1147488	0.85[EUR][1000 genomes]
rs1147499	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1147500	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1147503	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196497	0.95[AFR][1000 genomes]
rs1196498	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1196500	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12055989	0.85[ASN][1000 genomes]
rs12056133	0.83[ASN][1000 genomes]
rs1206384	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17143947	0.85[ASN][1000 genomes]
rs1860721	0.83[ASN][1000 genomes]
rs1916872	0.93[ASN][1000 genomes]
rs28730482	0.85[EUR][1000 genomes]
rs3757544	0.85[ASN][1000 genomes]
rs940422	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs940423	0.93[EUR][1000 genomes]
rs9641680	0.85[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121624000-121647800	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:121625000-121650800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:121626000-121650600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:121626000-121651000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:121626400-121650400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:121627800-121650600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:121628200-121650000	Weak transcription	Brain Germinal Matrix	brain
8	chr7:121629000-121650000	Weak transcription	Fetal Brain Female	brain
9	chr7:121632400-121645800	Weak transcription	NHEK	skin
10	chr7:121632400-121646400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:121633200-121637200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:121633200-121649200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:121634400-121706000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:121635200-121639400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:121635200-121639800	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:121635200-121647400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:121635400-121650800	Weak transcription	Fetal Brain Male	brain
18	chr7:121635600-121639600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr7:121635800-121639600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr7:121636400-121639600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:121636400-121640200	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr7:121636400-121640600	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:121636600-121639600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:121636800-121637600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:121637000-121638400	Strong transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links