Variant report

Variant	rs1206384
Chromosome Location	chr7:121657708-121657709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10253893	0.83[ASN][1000 genomes]
rs1147488	1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1147499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1147500	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1147503	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1196498	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196500	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1206386	0.88[ASN][1000 genomes]
rs1211982	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12669983	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs12671513	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17143947	1.00[JPT][hapmap]
rs1860721	1.00[JPT][hapmap]
rs1916872	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2177510	0.82[JPT][hapmap]
rs2215359	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2268074	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs28579799	0.83[ASN][1000 genomes]
rs28730482	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3757544	1.00[JPT][hapmap]
rs73440967	0.83[ASN][1000 genomes]
rs940422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs940423	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv365800	chr7:121657633-121658775	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121634400-121706000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121651200-121717600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:121652200-121679000	Weak transcription	NHEK	skin
4	chr7:121652400-121683200	Weak transcription	Brain Germinal Matrix	brain
5	chr7:121653800-121670200	Weak transcription	Fetal Brain Male	brain
6	chr7:121653800-121672600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:121653800-121673600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:121654000-121661200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:121654000-121664000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:121654000-121672200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:121654000-121672400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:121654000-121673200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:121654000-121675400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:121654000-121675600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:121654000-121679000	Weak transcription	Fetal Brain Female	brain
16	chr7:121654000-121679400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:121654200-121658400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:121654200-121671200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr7:121654600-121659200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:121655600-121699000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:121656800-121661800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:121657600-121663000	Strong transcription	Cortex derived primary cultured neurospheres	brain

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