Variant report

Variant	rs3801929
Chromosome Location	chr7:107814331-107814332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107812732..107814882-chr7:107818342..107819926,2	K562	blood:
2	chr7:107806434..107808265-chr7:107813205..107815198,2	K562	blood:

Variant related genes	Relation type
ENSG00000091129	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10224607	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10257555	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10464622	1.00[CEU][hapmap]
rs10464628	1.00[CEU][hapmap]
rs11983886	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12531903	1.00[CEU][hapmap]
rs12669568	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap]
rs12670073	0.88[ASN][1000 genomes]
rs16872446	1.00[CEU][hapmap]
rs16872448	1.00[CEU][hapmap]
rs16872449	1.00[CEU][hapmap]
rs16872465	1.00[CEU][hapmap]
rs16872472	1.00[CEU][hapmap]
rs16872481	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17155207	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap]
rs17155253	1.00[CEU][hapmap]
rs17155277	0.95[GIH][hapmap];1.00[MEX][hapmap]
rs17155280	1.00[CEU][hapmap]
rs17155301	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap]
rs17155316	1.00[CEU][hapmap]
rs17155345	1.00[CEU][hapmap]
rs17155362	1.00[CEU][hapmap]
rs17155369	1.00[CEU][hapmap]
rs2272618	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap]
rs2284279	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2284281	1.00[CEU][hapmap]
rs2299988	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2299991	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2299998	1.00[CEU][hapmap]
rs2300008	1.00[CEU][hapmap]
rs2300010	1.00[CEU][hapmap]
rs2300011	1.00[CEU][hapmap]
rs3750140	1.00[CEU][hapmap]
rs3753152	1.00[CEU][hapmap]
rs391210	0.90[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs396136	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs60368937	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61079379	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6956041	1.00[CEU][hapmap]
rs6956711	1.00[CEU][hapmap]
rs6966259	1.00[CEU][hapmap]
rs6978117	1.00[CEU][hapmap]
rs73197637	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73197646	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7777092	1.00[CEU][hapmap]
rs7777322	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap]
rs7783944	1.00[CEU][hapmap]
rs7784319	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap]
rs7784353	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap]
rs7785181	1.00[CEU][hapmap]
rs7795932	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv888941	chr7:107796150-107863395	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1030222	chr7:107809927-107844916	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107786800-107818400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:107786800-107819000	Weak transcription	Brain Angular Gyrus	brain
3	chr7:107786800-107857800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:107787000-107818800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:107787600-107818800	Weak transcription	Brain Anterior Caudate	brain
6	chr7:107787800-107844200	Weak transcription	Brain Germinal Matrix	brain
7	chr7:107790400-107816800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:107791000-107824600	Weak transcription	HUVEC	blood vessel
9	chr7:107800200-107815200	Weak transcription	A549	lung
10	chr7:107805800-107818800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:107808200-107820000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:107808600-107818400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:107808600-107818400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:107811200-107820000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:107811800-107821400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:107812400-107814800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:107812600-107818200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:107813200-107819000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr7:107813600-107820000	Weak transcription	Brain Hippocampus Middle	brain
20	chr7:107813800-107820000	Weak transcription	Fetal Brain Female	brain
21	chr7:107814200-107828400	Weak transcription	Fetal Intestine Small	intestine

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