Variant report

Variant	rs60368937
Chromosome Location	chr7:107806058-107806059
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107805156..107808052-chr7:107808628..107811838,4	K562	blood:
2	chr7:107803801..107808052-chr7:107808628..107811688,3	K562	blood:
3	chr7:107798997..107800868-chr7:107805789..107808643,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10224607	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10257555	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10464627	0.89[AMR][1000 genomes]
rs11983886	0.84[ASN][1000 genomes]
rs12667206	0.81[AMR][1000 genomes]
rs12670073	0.87[ASN][1000 genomes]
rs12671199	0.89[AMR][1000 genomes]
rs16872448	0.90[AMR][1000 genomes]
rs17155277	0.90[AMR][1000 genomes]
rs17155301	0.90[AMR][1000 genomes]
rs2072320	1.00[AMR][1000 genomes]
rs2299988	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2299991	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2299998	0.90[AMR][1000 genomes]
rs3801929	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs391210	0.84[ASN][1000 genomes]
rs396136	0.84[ASN][1000 genomes]
rs55772998	0.81[AMR][1000 genomes]
rs58523350	0.81[AMR][1000 genomes]
rs61040788	1.00[AMR][1000 genomes]
rs61079379	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6964394	1.00[AMR][1000 genomes]
rs73197637	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73197646	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7783944	0.90[AMR][1000 genomes]
rs7795932	0.94[ASN][1000 genomes]
rs7796457	1.00[AMR][1000 genomes]
rs9641405	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv888941	chr7:107796150-107863395	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107786800-107811800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:107786800-107818400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:107786800-107819000	Weak transcription	Brain Angular Gyrus	brain
4	chr7:107786800-107857800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:107787000-107818800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:107787600-107818800	Weak transcription	Brain Anterior Caudate	brain
7	chr7:107787800-107807800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:107787800-107844200	Weak transcription	Brain Germinal Matrix	brain
9	chr7:107790400-107816800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:107791000-107824600	Weak transcription	HUVEC	blood vessel
11	chr7:107799200-107808200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr7:107800000-107807800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:107800200-107815200	Weak transcription	A549	lung
14	chr7:107804200-107807800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:107805600-107807800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr7:107805800-107807200	Weak transcription	Pancreas	Pancrea
17	chr7:107805800-107818800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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