Variant report

Variant	rs58523350
Chromosome Location	chr7:107906530-107906531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107904463..107906961-chr7:107910225..107912402,2	MCF-7	breast:
2	chr7:107897446..107900433-chr7:107904725..107906956,2	K562	blood:
3	chr7:107897446..107899734-chr7:107904725..107907661,2	K562	blood:
4	chr7:107905891..107908548-chr7:107908939..107910827,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10464622	0.95[EUR][1000 genomes]
rs10464623	0.95[EUR][1000 genomes]
rs10464625	0.95[EUR][1000 genomes]
rs10464626	0.95[EUR][1000 genomes]
rs10464627	0.90[EUR][1000 genomes]
rs10464628	0.95[EUR][1000 genomes]
rs12665964	0.91[EUR][1000 genomes]
rs12667098	0.95[EUR][1000 genomes]
rs12667131	0.95[EUR][1000 genomes]
rs12667151	0.95[EUR][1000 genomes]
rs12667206	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12669568	1.00[EUR][1000 genomes]
rs12671199	0.85[EUR][1000 genomes]
rs12672376	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12674151	0.95[EUR][1000 genomes]
rs12674313	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16872448	1.00[EUR][1000 genomes]
rs16872449	1.00[EUR][1000 genomes]
rs16872465	1.00[EUR][1000 genomes]
rs16872472	1.00[EUR][1000 genomes]
rs17155207	1.00[EUR][1000 genomes]
rs17155253	1.00[EUR][1000 genomes]
rs17155277	1.00[EUR][1000 genomes]
rs17155280	1.00[EUR][1000 genomes]
rs17155301	1.00[EUR][1000 genomes]
rs17155316	1.00[EUR][1000 genomes]
rs17155345	0.95[EUR][1000 genomes]
rs17155362	1.00[EUR][1000 genomes]
rs17155369	1.00[EUR][1000 genomes]
rs2072320	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2272618	1.00[EUR][1000 genomes]
rs2299998	1.00[EUR][1000 genomes]
rs2300001	1.00[EUR][1000 genomes]
rs2300004	1.00[EUR][1000 genomes]
rs2300005	1.00[EUR][1000 genomes]
rs2300006	1.00[EUR][1000 genomes]
rs2300007	0.95[EUR][1000 genomes]
rs2300008	0.95[EUR][1000 genomes]
rs2300009	0.95[EUR][1000 genomes]
rs2300010	1.00[EUR][1000 genomes]
rs2300011	1.00[EUR][1000 genomes]
rs3750140	1.00[EUR][1000 genomes]
rs3753152	1.00[EUR][1000 genomes]
rs3817670	1.00[EUR][1000 genomes]
rs55772998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58432175	1.00[EUR][1000 genomes]
rs58799340	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59173255	1.00[EUR][1000 genomes]
rs60368937	0.81[AMR][1000 genomes]
rs60503554	1.00[EUR][1000 genomes]
rs61040788	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61057696	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67456250	1.00[EUR][1000 genomes]
rs67592649	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67940074	0.95[EUR][1000 genomes]
rs6956041	1.00[EUR][1000 genomes]
rs6956711	1.00[EUR][1000 genomes]
rs6964394	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6966259	1.00[EUR][1000 genomes]
rs6970634	0.86[EUR][1000 genomes]
rs6978117	1.00[EUR][1000 genomes]
rs73199578	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73199594	0.95[EUR][1000 genomes]
rs73199595	0.95[EUR][1000 genomes]
rs73199599	0.95[EUR][1000 genomes]
rs73199600	0.95[EUR][1000 genomes]
rs73201503	1.00[EUR][1000 genomes]
rs73201504	1.00[EUR][1000 genomes]
rs73201511	1.00[EUR][1000 genomes]
rs73201512	1.00[EUR][1000 genomes]
rs73201513	1.00[EUR][1000 genomes]
rs73201515	1.00[EUR][1000 genomes]
rs73414373	1.00[EUR][1000 genomes]
rs73727511	0.95[EUR][1000 genomes]
rs73727512	0.95[EUR][1000 genomes]
rs7777092	1.00[EUR][1000 genomes]
rs7777322	1.00[EUR][1000 genomes]
rs7783944	1.00[EUR][1000 genomes]
rs7784319	1.00[EUR][1000 genomes]
rs7784353	1.00[EUR][1000 genomes]
rs7785181	1.00[EUR][1000 genomes]
rs7796457	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9641405	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107887400-107925000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:107888000-107906800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:107892600-107906600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:107893200-107907400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:107901600-107907800	Enhancers	Fetal Muscle Leg	muscle
6	chr7:107904000-107908600	Weak transcription	Brain Angular Gyrus	brain
7	chr7:107904000-107910800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:107904200-107906600	Weak transcription	Fetal Brain Male	brain
9	chr7:107904200-107906800	Weak transcription	HSMM	muscle
10	chr7:107904400-107907400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr7:107904600-107906600	Weak transcription	Pancreas	Pancrea
12	chr7:107904800-107909000	Weak transcription	HSMMtube	muscle
13	chr7:107905000-107906800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr7:107905400-107906600	Strong transcription	A549	lung
15	chr7:107906000-107911000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:107906200-107906800	Weak transcription	Fetal Brain Female	brain

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