Variant report

Variant	rs55772998
Chromosome Location	chr7:107902035-107902036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107900771..107903077-chr7:107903914..107906383,2	K562	blood:
2	chr7:107895141..107897899-chr7:107901453..107903578,3	MCF-7	breast:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10464622	0.95[EUR][1000 genomes]
rs10464623	0.95[EUR][1000 genomes]
rs10464625	0.95[EUR][1000 genomes]
rs10464626	0.95[EUR][1000 genomes]
rs10464627	0.90[EUR][1000 genomes]
rs10464628	0.95[EUR][1000 genomes]
rs12665964	0.91[EUR][1000 genomes]
rs12667098	0.95[EUR][1000 genomes]
rs12667131	0.95[EUR][1000 genomes]
rs12667151	0.95[EUR][1000 genomes]
rs12667206	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12669568	1.00[EUR][1000 genomes]
rs12671199	0.85[EUR][1000 genomes]
rs12672376	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12674151	0.95[EUR][1000 genomes]
rs12674313	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16872448	1.00[EUR][1000 genomes]
rs16872449	1.00[EUR][1000 genomes]
rs16872465	1.00[EUR][1000 genomes]
rs16872472	1.00[EUR][1000 genomes]
rs17155207	1.00[EUR][1000 genomes]
rs17155253	1.00[EUR][1000 genomes]
rs17155277	1.00[EUR][1000 genomes]
rs17155280	1.00[EUR][1000 genomes]
rs17155301	1.00[EUR][1000 genomes]
rs17155316	1.00[EUR][1000 genomes]
rs17155345	0.95[EUR][1000 genomes]
rs17155362	1.00[EUR][1000 genomes]
rs17155369	1.00[EUR][1000 genomes]
rs2072320	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2272618	1.00[EUR][1000 genomes]
rs2299998	1.00[EUR][1000 genomes]
rs2300001	1.00[EUR][1000 genomes]
rs2300004	1.00[EUR][1000 genomes]
rs2300005	1.00[EUR][1000 genomes]
rs2300006	1.00[EUR][1000 genomes]
rs2300007	0.95[EUR][1000 genomes]
rs2300008	0.95[EUR][1000 genomes]
rs2300009	0.95[EUR][1000 genomes]
rs2300010	1.00[EUR][1000 genomes]
rs2300011	1.00[EUR][1000 genomes]
rs3750140	1.00[EUR][1000 genomes]
rs3753152	1.00[EUR][1000 genomes]
rs3817670	1.00[EUR][1000 genomes]
rs58432175	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58523350	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58799340	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59173255	1.00[EUR][1000 genomes]
rs60368937	0.81[AMR][1000 genomes]
rs60503554	1.00[EUR][1000 genomes]
rs61040788	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61057696	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67456250	1.00[EUR][1000 genomes]
rs67592649	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67940074	0.95[EUR][1000 genomes]
rs6956041	1.00[EUR][1000 genomes]
rs6956711	1.00[EUR][1000 genomes]
rs6964394	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6966259	1.00[EUR][1000 genomes]
rs6970634	0.86[EUR][1000 genomes]
rs6978117	1.00[EUR][1000 genomes]
rs73199578	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73199594	0.95[EUR][1000 genomes]
rs73199595	0.95[EUR][1000 genomes]
rs73199599	0.95[EUR][1000 genomes]
rs73199600	0.95[EUR][1000 genomes]
rs73201503	1.00[EUR][1000 genomes]
rs73201504	1.00[EUR][1000 genomes]
rs73201511	1.00[EUR][1000 genomes]
rs73201512	1.00[EUR][1000 genomes]
rs73201513	1.00[EUR][1000 genomes]
rs73201515	1.00[EUR][1000 genomes]
rs73414373	1.00[EUR][1000 genomes]
rs73727511	0.95[EUR][1000 genomes]
rs73727512	0.95[EUR][1000 genomes]
rs7777092	1.00[EUR][1000 genomes]
rs7777322	1.00[EUR][1000 genomes]
rs7783944	1.00[EUR][1000 genomes]
rs7784319	1.00[EUR][1000 genomes]
rs7784353	1.00[EUR][1000 genomes]
rs7785181	1.00[EUR][1000 genomes]
rs7796457	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9641405	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107887400-107925000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:107888000-107906800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:107892600-107906600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:107893200-107907400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:107894000-107904000	Weak transcription	Pancreas	Pancrea
6	chr7:107894600-107904200	Weak transcription	K562	blood
7	chr7:107899200-107905400	Weak transcription	A549	lung
8	chr7:107901200-107902200	Weak transcription	Psoas Muscle	Psoas
9	chr7:107901600-107907800	Enhancers	Fetal Muscle Leg	muscle

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