Variant report

Variant	rs12667206
Chromosome Location	chr7:107908608-107908609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10464622	0.91[EUR][1000 genomes]
rs10464623	0.91[EUR][1000 genomes]
rs10464625	0.91[EUR][1000 genomes]
rs10464626	0.91[EUR][1000 genomes]
rs10464627	0.86[EUR][1000 genomes]
rs10464628	0.91[EUR][1000 genomes]
rs12665964	0.87[EUR][1000 genomes]
rs12667098	0.91[EUR][1000 genomes]
rs12667131	0.91[EUR][1000 genomes]
rs12667151	0.91[EUR][1000 genomes]
rs12669568	0.95[EUR][1000 genomes]
rs12671199	0.81[EUR][1000 genomes]
rs12672376	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12674151	0.91[EUR][1000 genomes]
rs12674313	0.84[AMR][1000 genomes]
rs16872448	0.95[EUR][1000 genomes]
rs16872449	0.95[EUR][1000 genomes]
rs16872465	0.95[EUR][1000 genomes]
rs16872472	0.95[EUR][1000 genomes]
rs17155207	0.95[EUR][1000 genomes]
rs17155253	0.95[EUR][1000 genomes]
rs17155277	0.95[EUR][1000 genomes]
rs17155280	0.95[EUR][1000 genomes]
rs17155301	0.95[EUR][1000 genomes]
rs17155316	0.95[EUR][1000 genomes]
rs17155345	0.91[EUR][1000 genomes]
rs17155362	0.95[EUR][1000 genomes]
rs17155369	0.95[EUR][1000 genomes]
rs2072320	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2272618	0.95[EUR][1000 genomes]
rs2299998	0.95[EUR][1000 genomes]
rs2300001	0.95[EUR][1000 genomes]
rs2300004	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2300005	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2300006	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2300007	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2300008	0.91[EUR][1000 genomes]
rs2300009	0.91[EUR][1000 genomes]
rs2300010	0.95[EUR][1000 genomes]
rs2300011	0.95[EUR][1000 genomes]
rs3750140	0.95[EUR][1000 genomes]
rs3753152	0.95[EUR][1000 genomes]
rs3817670	0.95[EUR][1000 genomes]
rs55772998	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58432175	0.95[EUR][1000 genomes]
rs58523350	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58799340	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59173255	0.95[EUR][1000 genomes]
rs60368937	0.81[AMR][1000 genomes]
rs60503554	0.95[EUR][1000 genomes]
rs61040788	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61057696	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67456250	0.95[EUR][1000 genomes]
rs67592649	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67940074	0.91[EUR][1000 genomes]
rs6956041	0.95[EUR][1000 genomes]
rs6956711	0.95[EUR][1000 genomes]
rs6964394	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6966259	0.95[EUR][1000 genomes]
rs6970634	0.82[EUR][1000 genomes]
rs6978117	0.95[EUR][1000 genomes]
rs73199578	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73199594	0.91[EUR][1000 genomes]
rs73199595	0.91[EUR][1000 genomes]
rs73199599	0.91[EUR][1000 genomes]
rs73199600	0.91[EUR][1000 genomes]
rs73201503	0.95[EUR][1000 genomes]
rs73201504	0.95[EUR][1000 genomes]
rs73201511	0.95[EUR][1000 genomes]
rs73201512	0.95[EUR][1000 genomes]
rs73201513	0.95[EUR][1000 genomes]
rs73201515	0.95[EUR][1000 genomes]
rs73414373	0.95[EUR][1000 genomes]
rs73727511	0.91[EUR][1000 genomes]
rs73727512	0.91[EUR][1000 genomes]
rs7777092	0.95[EUR][1000 genomes]
rs7777322	0.95[EUR][1000 genomes]
rs7783944	0.95[EUR][1000 genomes]
rs7784319	0.95[EUR][1000 genomes]
rs7784353	0.95[EUR][1000 genomes]
rs7785181	0.95[EUR][1000 genomes]
rs7796457	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9641405	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107887400-107925000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:107904000-107910800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:107904800-107909000	Weak transcription	HSMMtube	muscle
4	chr7:107906000-107911000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:107906600-107909600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:107907000-107908800	Weak transcription	HSMM	muscle
7	chr7:107907000-107911400	Enhancers	A549	lung
8	chr7:107907200-107923400	Weak transcription	Fetal Brain Male	brain
9	chr7:107907400-107908800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:107907400-107911400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:107907400-107919400	Weak transcription	HUVEC	blood vessel
12	chr7:107907400-107923400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:107907800-107925000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:107908000-107909000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:107908200-107910000	Enhancers	NH-A	brain
16	chr7:107908600-107908800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr7:107908600-107908800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:107908600-107908800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:107908600-107908800	Enhancers	Brain Angular Gyrus	brain
20	chr7:107908600-107909600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr7:107908600-107910400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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