Variant report

Variant	rs12672376
Chromosome Location	chr7:107895757-107895758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107886563..107889560-chr7:107893965..107897090,3	MCF-7	breast:
2	chr7:107895141..107897899-chr7:107901453..107903578,3	MCF-7	breast:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10464622	0.86[EUR][1000 genomes]
rs10464623	0.86[EUR][1000 genomes]
rs10464625	0.86[EUR][1000 genomes]
rs10464626	0.86[EUR][1000 genomes]
rs10464627	0.81[EUR][1000 genomes]
rs10464628	0.86[EUR][1000 genomes]
rs12665964	0.82[EUR][1000 genomes]
rs12667098	0.86[EUR][1000 genomes]
rs12667131	0.86[EUR][1000 genomes]
rs12667151	0.86[EUR][1000 genomes]
rs12667206	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12669568	0.90[EUR][1000 genomes]
rs12671199	0.84[EUR][1000 genomes]
rs12674151	0.86[EUR][1000 genomes]
rs12674313	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16872448	0.90[EUR][1000 genomes]
rs16872449	0.90[EUR][1000 genomes]
rs16872465	0.90[EUR][1000 genomes]
rs16872472	0.90[EUR][1000 genomes]
rs17155207	0.90[EUR][1000 genomes]
rs17155253	0.90[EUR][1000 genomes]
rs17155277	0.90[EUR][1000 genomes]
rs17155280	0.90[EUR][1000 genomes]
rs17155301	0.90[EUR][1000 genomes]
rs17155316	0.90[EUR][1000 genomes]
rs17155345	0.86[EUR][1000 genomes]
rs17155362	0.90[EUR][1000 genomes]
rs17155369	0.90[EUR][1000 genomes]
rs2072320	0.90[EUR][1000 genomes]
rs2272618	0.90[EUR][1000 genomes]
rs2299998	0.90[EUR][1000 genomes]
rs2300001	0.90[EUR][1000 genomes]
rs2300004	0.90[EUR][1000 genomes]
rs2300005	0.90[EUR][1000 genomes]
rs2300006	0.90[EUR][1000 genomes]
rs2300007	0.86[EUR][1000 genomes]
rs2300008	0.86[EUR][1000 genomes]
rs2300009	0.86[EUR][1000 genomes]
rs2300010	0.90[EUR][1000 genomes]
rs2300011	0.90[EUR][1000 genomes]
rs3750140	0.90[EUR][1000 genomes]
rs3753152	0.90[EUR][1000 genomes]
rs3817670	0.90[EUR][1000 genomes]
rs55772998	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58432175	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58523350	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58799340	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59173255	0.90[EUR][1000 genomes]
rs60503554	0.90[EUR][1000 genomes]
rs61040788	0.90[EUR][1000 genomes]
rs61057696	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67456250	0.90[EUR][1000 genomes]
rs67592649	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67940074	0.86[EUR][1000 genomes]
rs6956041	0.90[EUR][1000 genomes]
rs6956711	0.90[EUR][1000 genomes]
rs6964394	0.90[EUR][1000 genomes]
rs6966259	0.90[EUR][1000 genomes]
rs6970634	0.95[EUR][1000 genomes]
rs6978117	0.90[EUR][1000 genomes]
rs73199578	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73199594	0.86[EUR][1000 genomes]
rs73199595	0.86[EUR][1000 genomes]
rs73199599	0.86[EUR][1000 genomes]
rs73199600	0.86[EUR][1000 genomes]
rs73201503	0.90[EUR][1000 genomes]
rs73201504	0.90[EUR][1000 genomes]
rs73201511	0.90[EUR][1000 genomes]
rs73201512	0.90[EUR][1000 genomes]
rs73201513	0.90[EUR][1000 genomes]
rs73201515	0.90[EUR][1000 genomes]
rs73414373	0.90[EUR][1000 genomes]
rs73727511	0.86[EUR][1000 genomes]
rs73727512	0.86[EUR][1000 genomes]
rs7777092	0.90[EUR][1000 genomes]
rs7777322	0.90[EUR][1000 genomes]
rs7783944	0.90[EUR][1000 genomes]
rs7784319	0.90[EUR][1000 genomes]
rs7784353	0.90[EUR][1000 genomes]
rs7785181	0.90[EUR][1000 genomes]
rs7796457	0.90[EUR][1000 genomes]
rs9641405	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107887400-107925000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:107888000-107906800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:107892600-107906600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:107893200-107907400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:107894000-107898400	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:107894000-107904000	Weak transcription	Pancreas	Pancrea
7	chr7:107894400-107898400	Weak transcription	HMEC	breast
8	chr7:107894600-107904200	Weak transcription	K562	blood
9	chr7:107895400-107897000	Weak transcription	A549	lung
10	chr7:107895600-107899800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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