Variant report

Variant	rs10464627
Chromosome Location	chr7:107918837-107918838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10464622	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10464623	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10464625	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10464626	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10464628	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665964	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12667098	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12667131	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12667151	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12667206	0.86[EUR][1000 genomes]
rs12669568	0.90[EUR][1000 genomes]
rs12671199	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12672376	0.81[EUR][1000 genomes]
rs12674151	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1269672	0.91[ASN][1000 genomes]
rs1269674	0.91[ASN][1000 genomes]
rs1269676	0.91[ASN][1000 genomes]
rs1269677	0.91[ASN][1000 genomes]
rs1269678	0.91[ASN][1000 genomes]
rs1269679	0.91[ASN][1000 genomes]
rs1269680	0.91[ASN][1000 genomes]
rs1269681	0.91[ASN][1000 genomes]
rs1269682	0.91[ASN][1000 genomes]
rs1269683	0.91[ASN][1000 genomes]
rs16872448	0.90[EUR][1000 genomes]
rs16872449	0.90[EUR][1000 genomes]
rs16872465	0.90[EUR][1000 genomes]
rs16872472	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17155207	0.90[EUR][1000 genomes]
rs17155253	0.90[EUR][1000 genomes]
rs17155277	0.90[EUR][1000 genomes]
rs17155280	0.90[EUR][1000 genomes]
rs17155301	0.90[EUR][1000 genomes]
rs17155316	0.90[EUR][1000 genomes]
rs17155345	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155362	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17155369	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2072320	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2272618	0.90[EUR][1000 genomes]
rs2299998	0.90[EUR][1000 genomes]
rs2300001	0.90[EUR][1000 genomes]
rs2300004	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2300005	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2300006	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2300007	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2300008	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2300009	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2300010	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2300011	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3750140	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3753152	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3817670	0.90[EUR][1000 genomes]
rs55772998	0.90[EUR][1000 genomes]
rs58432175	0.90[EUR][1000 genomes]
rs58523350	0.90[EUR][1000 genomes]
rs58799340	0.90[EUR][1000 genomes]
rs59173255	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60368937	0.89[AMR][1000 genomes]
rs60503554	0.90[EUR][1000 genomes]
rs61040788	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61057696	0.90[EUR][1000 genomes]
rs67456250	0.90[EUR][1000 genomes]
rs67592649	0.90[EUR][1000 genomes]
rs67940074	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956041	0.90[EUR][1000 genomes]
rs6956711	0.90[EUR][1000 genomes]
rs6964394	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6966259	0.90[EUR][1000 genomes]
rs6970634	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6978117	0.90[EUR][1000 genomes]
rs73199578	0.90[EUR][1000 genomes]
rs73199594	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73199595	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73199599	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73199600	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73201503	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73201504	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73201511	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73201512	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73201513	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73201515	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73414373	0.90[EUR][1000 genomes]
rs73727511	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73727512	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7777092	0.90[EUR][1000 genomes]
rs7777322	0.90[EUR][1000 genomes]
rs7783944	0.90[EUR][1000 genomes]
rs7784319	0.90[EUR][1000 genomes]
rs7784353	0.90[EUR][1000 genomes]
rs7785181	0.90[EUR][1000 genomes]
rs7796457	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9641405	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1030425	chr7:107910716-108041036	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107887400-107925000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:107907200-107923400	Weak transcription	Fetal Brain Male	brain
3	chr7:107907400-107919400	Weak transcription	HUVEC	blood vessel
4	chr7:107907400-107923400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:107907800-107925000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:107911400-107922000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr7:107912600-107923000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:107917200-107922600	Weak transcription	Right Atrium	heart
9	chr7:107918000-107919000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:107918400-107919400	Strong transcription	A549	lung
11	chr7:107918400-107935000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:107918800-107919000	Enhancers	Pancreas	Pancrea
13	chr7:107918800-107919200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links