Variant report

Variant	rs1269672
Chromosome Location	chr7:107920607-107920608
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107911761..107914725-chr7:107919453..107921215,2	K562	blood:
2	chr7:107919806..107922501-chr7:107923966..107926073,3	K562	blood:
3	chr7:107912940..107914725-chr7:107919453..107922258,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10464622	0.91[ASN][1000 genomes]
rs10464623	0.91[ASN][1000 genomes]
rs10464625	0.91[ASN][1000 genomes]
rs10464626	0.91[ASN][1000 genomes]
rs10464627	0.91[ASN][1000 genomes]
rs10464628	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12665964	0.91[ASN][1000 genomes]
rs12667098	0.91[ASN][1000 genomes]
rs12667131	0.91[ASN][1000 genomes]
rs12667151	0.91[ASN][1000 genomes]
rs12674151	0.91[ASN][1000 genomes]
rs1269674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1269676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1269677	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1269678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1269679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1269680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1269681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1269682	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1269683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872472	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16872481	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs17155316	0.82[JPT][hapmap]
rs17155345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17155362	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17155369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2300004	0.86[ASN][1000 genomes]
rs2300005	0.89[ASN][1000 genomes]
rs2300006	0.89[ASN][1000 genomes]
rs2300007	0.89[ASN][1000 genomes]
rs2300008	0.91[ASN][1000 genomes]
rs2300009	0.97[ASN][1000 genomes]
rs2300010	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2300011	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs3750140	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3753152	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs59173255	0.97[ASN][1000 genomes]
rs67940074	0.91[ASN][1000 genomes]
rs6970634	0.88[ASN][1000 genomes]
rs73199594	0.91[ASN][1000 genomes]
rs73199595	0.91[ASN][1000 genomes]
rs73199599	0.91[ASN][1000 genomes]
rs73199600	0.91[ASN][1000 genomes]
rs73201503	1.00[ASN][1000 genomes]
rs73201504	1.00[ASN][1000 genomes]
rs73201511	0.86[ASN][1000 genomes]
rs73201512	0.86[ASN][1000 genomes]
rs73201513	0.86[ASN][1000 genomes]
rs73201515	0.81[ASN][1000 genomes]
rs73201518	0.81[ASN][1000 genomes]
rs73727511	0.91[ASN][1000 genomes]
rs73727512	0.91[ASN][1000 genomes]
rs759549	0.92[CEU][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1030425	chr7:107910716-108041036	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107887400-107925000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:107907200-107923400	Weak transcription	Fetal Brain Male	brain
3	chr7:107907400-107923400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:107907800-107925000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:107911400-107922000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:107912600-107923000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:107917200-107922600	Weak transcription	Right Atrium	heart
8	chr7:107918400-107935000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:107919200-107924800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:107919400-107924200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr7:107919400-107926400	Enhancers	HUVEC	blood vessel
12	chr7:107920200-107921000	Enhancers	Fetal Lung	lung
13	chr7:107920200-107921000	Enhancers	Spleen	Spleen
14	chr7:107920200-107921200	Enhancers	Brain Cingulate Gyrus	brain
15	chr7:107920400-107923200	Enhancers	A549	lung
16	chr7:107920600-107921000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:107920600-107921400	Enhancers	Brain Substantia Nigra	brain
18	chr7:107920600-107923800	Weak transcription	Pancreas	Pancrea

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