Variant report

Variant	rs73201518
Chromosome Location	chr7:107932799-107932800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107930681..107933463-chr7:108038843..108040431,2	MCF-7	breast:
2	chr7:107930752..107933426-chr7:107936477..107939262,3	MCF-7	breast:
3	chr7:107926710..107929161-chr7:107930856..107933186,2	K562	blood:
4	chr7:107902658..107904390-chr7:107932763..107934813,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12671199	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1269672	0.81[ASN][1000 genomes]
rs1269674	0.81[ASN][1000 genomes]
rs1269676	0.81[ASN][1000 genomes]
rs1269677	0.81[ASN][1000 genomes]
rs1269678	0.81[ASN][1000 genomes]
rs1269679	0.81[ASN][1000 genomes]
rs1269680	0.81[ASN][1000 genomes]
rs1269681	0.81[ASN][1000 genomes]
rs1269682	0.81[ASN][1000 genomes]
rs1269683	0.81[ASN][1000 genomes]
rs16872472	0.81[ASN][1000 genomes]
rs16872481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155362	0.81[ASN][1000 genomes]
rs17155369	0.84[ASN][1000 genomes]
rs2300010	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2300011	1.00[ASN][1000 genomes]
rs3750140	0.81[ASN][1000 genomes]
rs3753152	0.81[ASN][1000 genomes]
rs59173255	0.84[ASN][1000 genomes]
rs73201503	0.81[ASN][1000 genomes]
rs73201504	0.81[ASN][1000 genomes]
rs73201511	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73201512	0.95[ASN][1000 genomes]
rs73201513	0.95[ASN][1000 genomes]
rs73201515	1.00[ASN][1000 genomes]
rs759549	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1030425	chr7:107910716-108041036	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107918400-107935000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:107924200-107939600	Weak transcription	Pancreas	Pancrea
3	chr7:107925400-107952000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:107925800-107937400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:107927200-107935000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:107927200-107935200	Weak transcription	HMEC	breast
7	chr7:107927200-107939600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:107929800-107933600	Enhancers	Fetal Kidney	kidney
9	chr7:107930200-107932800	Enhancers	Fetal Intestine Large	intestine
10	chr7:107930200-107933400	Enhancers	Fetal Intestine Small	intestine
11	chr7:107930200-107934800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr7:107930200-107938400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr7:107930400-107933000	Flanking Active TSS	A549	lung
14	chr7:107930600-107933800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr7:107930600-107934000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:107930600-107934000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:107930600-107934600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:107930600-107936400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:107930600-107938400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:107930800-107933000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:107930800-107934000	Enhancers	Brain Germinal Matrix	brain
22	chr7:107931000-107935000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr7:107931000-107947400	Weak transcription	Fetal Brain Female	brain
24	chr7:107931200-107933200	Enhancers	Adipose Nuclei	Adipose
25	chr7:107931200-107934000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:107931400-107932800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr7:107931400-107933600	Weak transcription	Brain Substantia Nigra	brain
28	chr7:107931600-107933000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr7:107931800-107933000	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:107932000-107933200	Enhancers	HUVEC	blood vessel
31	chr7:107932000-107950600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr7:107932200-107933200	Weak transcription	Brain Angular Gyrus	brain
33	chr7:107932200-107933800	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr7:107932200-107933800	Enhancers	Fetal Lung	lung
35	chr7:107932200-107939800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr7:107932400-107932800	Weak transcription	NH-A	brain
37	chr7:107932400-107933000	Weak transcription	Fetal Brain Male	brain
38	chr7:107932400-107933800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr7:107932400-107935000	Weak transcription	NHEK	skin
40	chr7:107932400-107937400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr7:107932400-107938000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr7:107932600-107932800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr7:107932600-107933200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr7:107932600-107933200	Enhancers	Osteobl	bone
45	chr7:107932600-107933400	Weak transcription	Brain Anterior Caudate	brain
46	chr7:107932600-107933600	Weak transcription	Aorta	Aorta
47	chr7:107932600-107933800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr7:107932600-107934600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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