Variant report

Variant	rs73197637
Chromosome Location	chr7:107785140-107785141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10224607	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10257555	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11983886	0.82[ASN][1000 genomes]
rs12670073	0.89[ASN][1000 genomes]
rs2072320	0.81[AMR][1000 genomes]
rs2299988	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2299991	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3801929	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs391210	0.82[ASN][1000 genomes]
rs396136	0.82[ASN][1000 genomes]
rs60368937	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61040788	0.81[AMR][1000 genomes]
rs61079379	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6964394	0.81[AMR][1000 genomes]
rs73197646	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73201504	0.82[AMR][1000 genomes]
rs7795932	0.96[ASN][1000 genomes]
rs7796457	0.81[AMR][1000 genomes]
rs9641405	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107774800-107786000	Weak transcription	NHEK	skin
2	chr7:107775800-107789000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:107779800-107789200	Weak transcription	HUVEC	blood vessel
4	chr7:107780000-107786400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:107780200-107786400	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:107781000-107786600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:107781200-107785600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:107781400-107786000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:107781600-107786400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:107782600-107786000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:107782800-107786400	Weak transcription	Brain Angular Gyrus	brain
12	chr7:107783000-107792600	Weak transcription	Pancreas	Pancrea
13	chr7:107783400-107786400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr7:107784200-107786200	Weak transcription	Fetal Intestine Small	intestine
15	chr7:107784200-107786400	Weak transcription	Fetal Intestine Large	intestine
16	chr7:107784600-107786800	Enhancers	Fetal Stomach	stomach
17	chr7:107784800-107786600	Weak transcription	K562	blood
18	chr7:107784800-107789000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:107785000-107786600	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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