Variant report

Variant	rs380262
Chromosome Location	chr3:21416219-21416220
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs148456	0.81[EUR][1000 genomes]
rs1507814	0.81[EUR][1000 genomes]
rs1621650	0.81[EUR][1000 genomes]
rs1656662	0.81[EUR][1000 genomes]
rs1656666	0.81[EUR][1000 genomes]
rs1697707	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1697711	0.81[EUR][1000 genomes]
rs1697713	0.81[EUR][1000 genomes]
rs1702772	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs341856	0.81[CEU][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs341863	0.81[EUR][1000 genomes]
rs378681	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs386201	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs388126	0.81[EUR][1000 genomes]
rs397440	0.81[EUR][1000 genomes]
rs400572	0.81[EUR][1000 genomes]
rs405338	0.81[EUR][1000 genomes]
rs407886	0.81[EUR][1000 genomes]
rs411616	0.85[CEU][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs421433	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs423727	0.81[EUR][1000 genomes]
rs423879	0.85[CEU][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs430203	0.81[EUR][1000 genomes]
rs442920	0.80[CEU][hapmap]
rs446992	0.81[EUR][1000 genomes]
rs449166	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs449973	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs776642	0.84[CEU][hapmap]
rs9820551	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9866352	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834630	chr3:21311619-21491327	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1011516	chr3:21337788-21472093	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv876609	chr3:21337956-21424985	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876610	chr3:21345639-21424985	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1000828	chr3:21399870-21565580	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv536515	chr3:21399870-21565580	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21414600-21418200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:21414800-21418000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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