Variant report

Variant	rs449166
Chromosome Location	chr3:21428730-21428731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1083091	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs148456	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1507814	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1621650	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1656662	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1656666	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1697707	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1697711	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1697713	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1702772	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs180502	0.86[AMR][1000 genomes]
rs341856	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs341863	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs341864	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs341865	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs366609	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs378681	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs380262	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs386201	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs386371	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs388126	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs397440	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs400572	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs405338	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs407886	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs411616	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs418192	0.88[AMR][1000 genomes]
rs421433	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs423727	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs423879	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs430203	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs430387	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs440905	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs442920	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs446992	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs449973	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs711728	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs711729	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs776642	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs800605	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9820551	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9866352	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834630	chr3:21311619-21491327	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1011516	chr3:21337788-21472093	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1000828	chr3:21399870-21565580	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv536515	chr3:21399870-21565580	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21424200-21432800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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