Variant report

Variant	rs3803365
Chromosome Location	chr15:52263619-52263620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52094295..52095871-chr15:52261900..52263731,2	MCF-7	breast:
2	chr15:52261233..52265470-chr15:52469433..52474401,7	MCF-7	breast:
3	chr15:52243665..52246508-chr15:52262168..52265352,3	MCF-7	breast:
4	chr15:52262145..52266701-chr15:52309209..52314377,19	MCF-7	breast:
5	chr15:52263277..52265007-chr15:52427883..52430038,2	MCF-7	breast:
6	chr15:52262628..52265811-chr15:52469801..52473537,4	MCF-7	breast:
7	chr15:52262398..52265193-chr15:52386264..52389426,3	MCF-7	breast:
8	chr15:52263208..52265625-chr15:52404085..52407650,4	MCF-7	breast:
9	chr15:52262536..52264088-chr15:52296110..52298428,2	MCF-7	breast:
10	chr15:52262270..52265607-chr15:52309730..52314612,10	K562	blood:
11	chr15:52244109..52249001-chr15:52262072..52265545,5	MCF-7	breast:
12	chr15:52263578..52264205-chr16:30905028..30905583,2	Hela-S3	cervix:
13	chr15:52262830..52265268-chr15:52372078..52374982,4	MCF-7	breast:
14	chr15:52073675..52076293-chr15:52262420..52265302,2	MCF-7	breast:
15	chr15:52258924..52260672-chr15:52262065..52263877,2	K562	blood:
16	chr15:52259207..52267788-chr15:52308373..52314434,24	MCF-7	breast:
17	chr15:52165419..52167687-chr15:52262244..52264140,2	MCF-7	breast:
18	chr15:52262650..52264778-chr15:52432288..52435005,3	MCF-7	breast:
19	chr15:52263518..52264139-chr18:33552244..33552887,2	MCF-7	breast:
20	chr1:86173626..86174408-chr15:52263575..52264268,2	NB4	blood:
21	chr15:52262263..52265564-chr15:52309489..52315686,9	K562	blood:
22	chr15:52263605..52264209-chr5:10353462..10354012,2	HCT-116	colon:
23	chr15:52262407..52265136-chr15:52430706..52432521,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000166477	Chromatin interaction
ENSG00000145495	Chromatin interaction
ENSG00000128872	Chromatin interaction
ENSG00000069956	Chromatin interaction
ENSG00000259178	Chromatin interaction
ENSG00000211591	Chromatin interaction
ENSG00000141428	Chromatin interaction
ENSG00000117174	Chromatin interaction
ENSG00000099385	Chromatin interaction
ENSG00000137875	Chromatin interaction
ENSG00000259577	Chromatin interaction
ENSG00000259802	Chromatin interaction
ENSG00000069966	Chromatin interaction
ENSG00000242327	Chromatin interaction
ENSG00000138594	Chromatin interaction
ENSG00000259438	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28416491	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2959281	0.84[JPT][hapmap]
rs3985808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs56903771	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs58370000	0.82[ASN][1000 genomes]
rs58471786	0.86[ASN][1000 genomes]
rs58601413	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs59784585	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs60409555	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs60700084	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830255	chr15:52133914-52274863	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1053788	chr15:52223389-52307138	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1047260	chr15:52257100-52337418	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
5	nsv569410	chr15:52257874-52273132	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52262200-52263800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:52262200-52264600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:52262200-52264800	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr15:52262200-52265000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:52262400-52264600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:52262400-52264600	Active TSS	Colonic Mucosa	Colon
7	chr15:52262400-52264800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:52262400-52265000	Active TSS	HSMM	muscle
9	chr15:52262600-52264600	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr15:52262600-52264600	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr15:52262600-52264600	Active TSS	GM12878-XiMat	blood
12	chr15:52262600-52264800	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr15:52262600-52264800	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr15:52262600-52264800	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr15:52262600-52264800	Active TSS	HMEC	breast
16	chr15:52262600-52264800	Active TSS	K562	blood
17	chr15:52262800-52263800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
18	chr15:52262800-52264000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr15:52262800-52264600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr15:52262800-52264600	Active TSS	H9 Cell Line	embryonic stem cell
21	chr15:52262800-52264600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:52262800-52264800	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr15:52262800-52264800	Active TSS	H1 Cell Line	embryonic stem cell
24	chr15:52262800-52264800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:52262800-52264800	Active TSS	HSMMtube	muscle
26	chr15:52263000-52263800	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr15:52263000-52263800	Flanking Active TSS	Liver	Liver
28	chr15:52263000-52264400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
29	chr15:52263000-52264600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:52263000-52264600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:52263000-52264600	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr15:52263000-52264600	Active TSS	Psoas Muscle	Psoas
33	chr15:52263000-52264600	Active TSS	Right Ventricle	heart
34	chr15:52263000-52264600	Active TSS	NHDF-Ad	bronchial
35	chr15:52263000-52264800	Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr15:52263000-52264800	Active TSS	Fetal Kidney	kidney
37	chr15:52263000-52264800	Active TSS	Fetal Muscle Trunk	muscle
38	chr15:52263000-52264800	Active TSS	A549	lung
39	chr15:52263200-52264000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
40	chr15:52263200-52264000	Bivalent/Poised TSS	HepG2	liver
41	chr15:52263200-52264400	Active TSS	Fetal Brain Male	brain
42	chr15:52263200-52264400	Active TSS	Gastric	stomach
43	chr15:52263200-52264400	Active TSS	Lung	lung
44	chr15:52263200-52264600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr15:52263200-52264600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:52263200-52264600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr15:52263200-52264600	Active TSS	Muscle Satellite Cultured Cells	--
48	chr15:52263200-52264600	Active TSS	Brain Cingulate Gyrus	brain
49	chr15:52263200-52264600	Active TSS	Esophagus	oesophagus
50	chr15:52263200-52264600	Active TSS	Fetal Stomach	stomach

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