The 2.0 version of rSNPBase

Variant report

Variant rs3806616
Chromosome Location chr3:99978982-99978983
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:99964800-99979000 Weak transcription Aorta Aorta
2 chr3:99966600-99979000 Weak transcription Gastric stomach
3 chr3:99973400-99979000 Weak transcription Fetal Intestine Small intestine
4 chr3:99973400-99979000 Weak transcription Left Ventricle heart
5 chr3:99973400-99979000 Weak transcription HSMM muscle
6 chr3:99976800-99979000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
7 chr3:99976800-99979000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr3:99976800-99979000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr3:99976800-99979000 Weak transcription Primary T killer naive cells fromperipheralblood blood
10 chr3:99976800-99979000 Weak transcription Lung lung
11 chr3:99976800-99979000 Weak transcription Ovary ovary
12 chr3:99976800-99979000 Weak transcription Pancreas Pancrea
13 chr3:99976800-99979000 Weak transcription Small Intestine intestine
14 chr3:99976800-99979000 Weak transcription NHLF lung
15 chr3:99976800-99979200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
16 chr3:99977000-99979000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr3:99977000-99979000 Enhancers NHDF-Ad bronchial
18 chr3:99977200-99979000 Weak transcription Esophagus oesophagus
19 chr3:99978000-99979000 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr3:99978000-99979000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
21 chr3:99978200-99979000 Enhancers Rectal Smooth Muscle rectum
22 chr3:99978400-99979000 Enhancers Primary T helper cells PMA-I stimulated --
23 chr3:99978400-99979000 Enhancers Muscle Satellite Cultured Cells --
24 chr3:99978400-99979000 Enhancers Colon Smooth Muscle Colon
25 chr3:99978400-99979000 Enhancers Fetal Stomach stomach
26 chr3:99978400-99979200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
27 chr3:99978400-99979600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr3:99978600-99979000 Enhancers Breast Myoepithelial Primary Cells Breast
29 chr3:99978600-99979000 Enhancers Primary T helper naive cells fromperipheralblood blood
30 chr3:99978600-99979000 Enhancers Primary T killer memory cells from peripheral blood blood
31 chr3:99978600-99979000 Enhancers Fetal Adrenal Gland Adrenal Gland
32 chr3:99978600-99979000 Active TSS HepG2 liver
33 chr3:99978600-99979200 Active TSS K562 blood
34 chr3:99978600-99980400 Active TSS Brain Angular Gyrus brain
35 chr3:99978800-99979000 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
36 chr3:99978800-99979000 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
37 chr3:99978800-99979000 Enhancers Primary T cells from cord blood blood
38 chr3:99978800-99979000 Enhancers Primary T cells fromperipheralblood blood
39 chr3:99978800-99979000 Enhancers Primary hematopoietic stem cells blood
40 chr3:99978800-99979000 Enhancers Primary hematopoietic stem cells short term culture blood
41 chr3:99978800-99979000 Enhancers Primary T helper naive cells from peripheral blood blood
42 chr3:99978800-99979000 Enhancers Primary T helper cells fromperipheralblood blood
43 chr3:99978800-99979000 Enhancers Primary T regulatory cells fromperipheralblood blood
44 chr3:99978800-99979000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr3:99978800-99979000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr3:99978800-99979000 Enhancers Cortex derived primary cultured neurospheres brain
47 chr3:99978800-99979000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
48 chr3:99978800-99979000 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
49 chr3:99978800-99979000 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr3:99978800-99979000 Enhancers Liver Liver

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Last update: Aug 31, 2015