Variant report

Variant	rs7625101
Chromosome Location	chr3:99929024-99929025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10511178	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs10936147	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11709240	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11709563	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11710065	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1228183	0.81[EUR][1000 genomes]
rs12629226	0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12631115	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12633745	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12633821	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13072367	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13074365	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13075241	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13078920	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13079423	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13079881	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13098188	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16842060	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16847139	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1979540	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2289509	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs277657	0.86[CHB][hapmap]
rs34314126	0.94[EUR][1000 genomes]
rs34384409	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34700788	0.94[EUR][1000 genomes]
rs34869521	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35141973	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35594119	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3772694	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs3772696	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs3772697	0.96[EUR][1000 genomes]
rs3772701	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3806616	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4263320	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs4928115	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4928121	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4928122	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4928163	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4928165	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4928168	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59233020	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61095099	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6414385	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs66757043	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67403774	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6762794	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs6763680	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6764125	0.94[EUR][1000 genomes]
rs6764957	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6765158	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6772774	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6774538	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6783067	0.80[YRI][hapmap]
rs6787142	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6787301	0.94[EUR][1000 genomes]
rs6791887	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6794668	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6808469	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs68094410	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71313591	0.94[EUR][1000 genomes]
rs7611566	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7615300	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99917800-99933000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:99926800-99931000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:99928000-99929400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:99928000-99929800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:99928000-99930000	Enhancers	Psoas Muscle	Psoas
6	chr3:99928000-99930600	Enhancers	Fetal Muscle Leg	muscle
7	chr3:99928000-99930600	Enhancers	Small Intestine	intestine
8	chr3:99928000-99930800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:99928000-99931200	Enhancers	H9 Cell Line	embryonic stem cell
10	chr3:99928200-99931000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:99928400-99930800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr3:99928400-99931200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:99928600-99929200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr3:99928600-99929200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr3:99928600-99929200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:99928600-99929200	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr3:99928600-99929400	Enhancers	Placenta	Placenta
18	chr3:99928600-99929800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr3:99928600-99929800	Enhancers	Primary T cells from cord blood	blood
20	chr3:99928600-99929800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:99928600-99929800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:99928600-99929800	Enhancers	Fetal Thymus	thymus
23	chr3:99928600-99929800	Enhancers	Right Ventricle	heart
24	chr3:99928600-99929800	Enhancers	Dnd41	blood
25	chr3:99928600-99930000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr3:99928600-99930000	Enhancers	Fetal Intestine Small	intestine
27	chr3:99928600-99930000	Enhancers	HepG2	liver
28	chr3:99928600-99930200	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr3:99928600-99930200	Enhancers	Fetal Intestine Large	intestine
30	chr3:99928600-99930400	Enhancers	H1 Cell Line	embryonic stem cell
31	chr3:99928600-99930400	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr3:99928600-99930600	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr3:99928800-99929200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:99928800-99929200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr3:99928800-99929200	Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr3:99928800-99929200	Active TSS	Duodenum Mucosa	Duodenum
37	chr3:99928800-99929400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:99928800-99929400	Enhancers	Primary B cells from peripheral blood	blood
39	chr3:99928800-99929400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
40	chr3:99928800-99929400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
41	chr3:99928800-99929400	Enhancers	Fetal Heart	heart
42	chr3:99928800-99929400	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr3:99928800-99929400	Flanking Active TSS	GM12878-XiMat	blood
44	chr3:99928800-99929600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
45	chr3:99928800-99929600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr3:99928800-99929600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr3:99928800-99929600	Enhancers	Aorta	Aorta
48	chr3:99928800-99929600	Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr3:99928800-99929600	Flanking Active TSS	Stomach Smooth Muscle	stomach
50	chr3:99928800-99929600	Flanking Active TSS	NHDF-Ad	bronchial

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