Variant report

Variant	rs6414385
Chromosome Location	chr3:99920261-99920262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10936147	0.85[ASN][1000 genomes]
rs11709240	0.84[ASN][1000 genomes]
rs11709563	0.85[ASN][1000 genomes]
rs11710065	0.84[ASN][1000 genomes]
rs12633745	0.83[ASN][1000 genomes]
rs12633821	0.94[ASN][1000 genomes]
rs13074365	0.85[ASN][1000 genomes]
rs13075241	0.84[ASN][1000 genomes]
rs13078920	0.93[ASN][1000 genomes]
rs13079881	0.84[ASN][1000 genomes]
rs16842060	0.84[ASN][1000 genomes]
rs16847139	0.84[ASN][1000 genomes]
rs1979540	0.85[ASN][1000 genomes]
rs34384409	0.85[ASN][1000 genomes]
rs34869521	0.85[ASN][1000 genomes]
rs35594119	0.85[ASN][1000 genomes]
rs3772701	0.81[ASN][1000 genomes]
rs3806616	0.85[ASN][1000 genomes]
rs4928115	0.85[ASN][1000 genomes]
rs4928121	0.84[ASN][1000 genomes]
rs4928122	0.84[ASN][1000 genomes]
rs4928163	0.92[ASN][1000 genomes]
rs4928165	0.85[ASN][1000 genomes]
rs59233020	0.94[ASN][1000 genomes]
rs61095099	0.84[ASN][1000 genomes]
rs66757043	0.85[ASN][1000 genomes]
rs67403774	0.84[ASN][1000 genomes]
rs6763680	0.86[ASN][1000 genomes]
rs6764957	0.85[ASN][1000 genomes]
rs6765158	0.83[ASN][1000 genomes]
rs6772774	0.85[ASN][1000 genomes]
rs6774538	0.85[ASN][1000 genomes]
rs6791887	0.81[ASN][1000 genomes]
rs6794668	0.84[ASN][1000 genomes]
rs6808469	0.82[ASN][1000 genomes]
rs68094410	0.84[ASN][1000 genomes]
rs7611566	0.94[ASN][1000 genomes]
rs7615300	0.85[ASN][1000 genomes]
rs7625101	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv822199	chr3:99915143-99925003	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99917600-99928600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:99917800-99933000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links