Variant report
| Variant | rs3811754 |
|---|---|
| Chromosome Location | chr4:118496905-118496906 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11098396 | 0.96[ASN][1000 genomes] |
| rs11562892 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11733276 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11734303 | 0.82[ASN][1000 genomes] |
| rs1387528 | 0.97[ASN][1000 genomes] |
| rs17862040 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17862950 | 1.00[CEU][hapmap] |
| rs17863861 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17863866 | 1.00[CEU][hapmap] |
| rs17866159 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17867500 | 1.00[CEU][hapmap] |
| rs17867501 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1948233 | 0.98[ASN][1000 genomes] |
| rs2245138 | 0.98[ASN][1000 genomes] |
| rs2245142 | 0.98[ASN][1000 genomes] |
| rs2245255 | 0.98[ASN][1000 genomes] |
| rs2245313 | 0.98[ASN][1000 genomes] |
| rs2245321 | 0.98[ASN][1000 genomes] |
| rs2245354 | 0.98[ASN][1000 genomes] |
| rs2635192 | 0.82[ASN][1000 genomes] |
| rs2635223 | 0.80[ASN][1000 genomes] |
| rs2635363 | 0.98[ASN][1000 genomes] |
| rs2635364 | 0.98[ASN][1000 genomes] |
| rs3811751 | 0.90[AMR][1000 genomes] |
| rs3811752 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes] |
| rs3811753 | 1.00[CEU][hapmap] |
| rs3811756 | 1.00[CEU][hapmap] |
| rs6534043 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv482430 | chr4:118347180-118497181 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv879831 | chr4:118470151-118502728 | Flanking Active TSS Active TSS Enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv966313 | chr4:118495717-118496996 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
