Variant report

Variant	rs3813535
Chromosome Location	chr14:81744736-81744737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81687510..81689760-chr14:81742676..81747496,4	MCF-7	breast:
2	chr14:81740817..81743318-chr14:81743948..81746611,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140022	Chromatin interaction
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17111601	0.81[CEU][hapmap]
rs6574635	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6574636	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs919378	0.86[CHB][hapmap];0.83[CHD][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3813535	ALKBH1	cis	parietal	SCAN
rs3813535	SNW1	cis	parietal	SCAN
rs3813535	GSTZ1	cis	parietal	SCAN

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81724600-81746000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:81727800-81746200	Weak transcription	NHDF-Ad	bronchial
3	chr14:81729400-81752600	Weak transcription	Stomach Mucosa	stomach
4	chr14:81733200-81753000	Weak transcription	Hela-S3	cervix
5	chr14:81735600-81760200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:81735800-81746400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:81736000-81746000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr14:81736400-81746600	Weak transcription	Liver	Liver
9	chr14:81737600-81748000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr14:81740200-81744800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr14:81740800-81745200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr14:81741800-81744800	Strong transcription	K562	blood
13	chr14:81741800-81768400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr14:81742000-81745000	Strong transcription	Fetal Muscle Trunk	muscle
15	chr14:81742200-81745000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr14:81742600-81745200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr14:81742600-81746800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:81742600-81747800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:81742600-81748200	Weak transcription	Fetal Brain Female	brain
20	chr14:81742600-81763400	Weak transcription	Psoas Muscle	Psoas
21	chr14:81742800-81745200	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr14:81743000-81744800	Strong transcription	H1 Cell Line	embryonic stem cell
23	chr14:81743000-81744800	Strong transcription	Placenta	Placenta
24	chr14:81743000-81745000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:81743000-81745000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr14:81743000-81746800	Weak transcription	Brain Germinal Matrix	brain
27	chr14:81743200-81744800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr14:81743200-81745000	Strong transcription	Fetal Intestine Small	intestine
29	chr14:81743200-81745000	Genic enhancers	Spleen	Spleen
30	chr14:81743200-81750200	Weak transcription	Brain Substantia Nigra	brain
31	chr14:81743400-81744800	Strong transcription	Fetal Intestine Large	intestine
32	chr14:81743400-81744800	Strong transcription	Fetal Stomach	stomach
33	chr14:81743400-81745000	Strong transcription	H9 Cell Line	embryonic stem cell
34	chr14:81743600-81744800	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr14:81743600-81745200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:81743600-81751200	Weak transcription	Brain Anterior Caudate	brain
37	chr14:81743800-81745000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:81743800-81745000	Strong transcription	Fetal Muscle Leg	muscle
39	chr14:81743800-81745000	Weak transcription	HepG2	liver
40	chr14:81743800-81745200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:81743800-81745400	Weak transcription	Lung	lung
42	chr14:81743800-81778400	Weak transcription	Fetal Kidney	kidney
43	chr14:81744000-81744800	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr14:81744000-81745000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr14:81744000-81745200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:81744000-81755800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr14:81744200-81744800	Strong transcription	Esophagus	oesophagus
48	chr14:81744200-81745000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr14:81744200-81745200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr14:81744200-81745400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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