Variant report

Variant	rs6574636
Chromosome Location	chr14:81745495-81745496
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81687510..81689760-chr14:81742676..81747496,4	MCF-7	breast:
2	chr14:81740817..81743318-chr14:81743948..81746611,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction
ENSG00000140022	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3813535	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6574635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574638	0.87[LWK][hapmap]
rs919378	0.85[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6574636	SNW1	cis	parietal	SCAN
rs6574636	ALKBH1	cis	parietal	SCAN
rs6574636	GSTZ1	cis	parietal	SCAN

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81724600-81746000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:81727800-81746200	Weak transcription	NHDF-Ad	bronchial
3	chr14:81729400-81752600	Weak transcription	Stomach Mucosa	stomach
4	chr14:81733200-81753000	Weak transcription	Hela-S3	cervix
5	chr14:81735600-81760200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:81735800-81746400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:81736000-81746000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr14:81736400-81746600	Weak transcription	Liver	Liver
9	chr14:81737600-81748000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr14:81741800-81768400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr14:81742600-81746800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:81742600-81747800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:81742600-81748200	Weak transcription	Fetal Brain Female	brain
14	chr14:81742600-81763400	Weak transcription	Psoas Muscle	Psoas
15	chr14:81743000-81746800	Weak transcription	Brain Germinal Matrix	brain
16	chr14:81743200-81750200	Weak transcription	Brain Substantia Nigra	brain
17	chr14:81743600-81751200	Weak transcription	Brain Anterior Caudate	brain
18	chr14:81743800-81778400	Weak transcription	Fetal Kidney	kidney
19	chr14:81744000-81755800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr14:81744200-81745600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr14:81744400-81746200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr14:81744400-81747000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr14:81744400-81758600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr14:81744400-81759200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr14:81744600-81747600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr14:81744600-81747600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr14:81744600-81747800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr14:81744600-81748400	Weak transcription	Gastric	stomach
29	chr14:81744800-81746400	Weak transcription	Fetal Stomach	stomach
30	chr14:81744800-81746800	Weak transcription	Fetal Intestine Large	intestine
31	chr14:81744800-81746800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr14:81744800-81747200	Weak transcription	Esophagus	oesophagus
33	chr14:81744800-81751000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr14:81744800-81751200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr14:81744800-81752800	Weak transcription	HMEC	breast
36	chr14:81744800-81753800	Weak transcription	Placenta	Placenta
37	chr14:81744800-81756800	Weak transcription	K562	blood
38	chr14:81745000-81747400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr14:81745000-81747600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr14:81745000-81754000	Weak transcription	Fetal Intestine Small	intestine
41	chr14:81745000-81754600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr14:81745000-81755200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr14:81745000-81755200	Weak transcription	Fetal Muscle Trunk	muscle
44	chr14:81745000-81755200	Weak transcription	Fetal Muscle Leg	muscle
45	chr14:81745000-81755400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr14:81745000-81755400	Weak transcription	Spleen	Spleen
47	chr14:81745000-81769600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:81745200-81746600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr14:81745200-81747400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr14:81745200-81747800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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