Variant report

Variant	rs3814204
Chromosome Location	chr10:5708801-5708802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr10:5708383-5708857	K562	blood:	n/a	n/a
2	KAP1	chr10:5708585-5709134	HEK293	kidney:	n/a	n/a
3	NFIC	chr10:5708503-5708902	HepG2	liver:	n/a	n/a
4	ZBTB7A	chr10:5707911-5708878	ECC-1	luminal epithelium:	n/a	n/a
5	HEY1	chr10:5708312-5708871	HepG2	liver:	n/a	chr10:5708359-5708374
6	POLR2A	chr10:5708145-5708989	HEK293	kidney:	n/a	n/a
7	MYC	chr10:5708617-5708819	MCF-7	breast:	n/a	n/a
8	GABPA	chr10:5708111-5708880	H1-hESC	embryonic stem cell:	n/a	chr10:5708349-5708358 chr10:5708178-5708187 chr10:5708456-5708465
9	IRF1	chr10:5708497-5708815	K562	blood:	n/a	n/a
10	CREB1	chr10:5708383-5709009	H1-hESC	embryonic stem cell:	n/a	n/a
11	MAX	chr10:5708772-5709254	HUVEC	blood vessel:	n/a	chr10:5708953-5708963 chr10:5709104-5709120 chr10:5709103-5709110 chr10:5708964-5708974
12	MXI1	chr10:5707968-5709249	HepG2	liver:	n/a	n/a
13	MYC	chr10:5708016-5708975	MCF10A-Er-Src	breast:	n/a	chr10:5708953-5708963 chr10:5708049-5708059 chr10:5708348-5708358 chr10:5708964-5708974
14	MAX	chr10:5707834-5709263	K562	blood:	n/a	chr10:5708953-5708963 chr10:5709104-5709120 chr10:5708049-5708059 chr10:5708348-5708358 chr10:5709103-5709110 chr10:5708964-5708974
15	MYC	chr10:5708008-5708955	H1-hESC	embryonic stem cell:	n/a	chr10:5708049-5708059 chr10:5708348-5708358
16	YY1	chr10:5708130-5708908	HepG2	liver:	n/a	chr10:5708426-5708440 chr10:5708346-5708355
17	ETS1	chr10:5708204-5708813	K562	blood:	n/a	n/a
18	MXI1	chr10:5708640-5708807	K562	blood:	n/a	n/a
19	REST	chr10:5708437-5708837	PFSK-1	brain:	n/a	chr10:5708672-5708685 chr10:5708672-5708692 chr10:5708672-5708681
20	CTCF	chr10:5708660-5708810	SK-N-SH_RA	brain:	n/a	n/a
21	ZBTB7A	chr10:5707910-5708839	ECC-1	luminal epithelium:	n/a	n/a
22	REST	chr10:5708521-5708805	H1-hESC	embryonic stem cell:	n/a	chr10:5708672-5708685 chr10:5708672-5708692 chr10:5708672-5708681
23	CREB1	chr10:5708000-5709299	HepG2	liver:	n/a	n/a
24	REST	chr10:5708464-5708915	U87	brain:	n/a	chr10:5708672-5708685 chr10:5708672-5708692 chr10:5708672-5708681
25	E2F6	chr10:5707905-5709231	K562	blood:	n/a	chr10:5708642-5708654 chr10:5708426-5708436 chr10:5708336-5708346 chr10:5708455-5708465 chr10:5708335-5708346 chr10:5708337-5708345 chr10:5708338-5708345 chr10:5708337-5708345
26	MYC	chr10:5708680-5709129	MCF-7	breast:	n/a	chr10:5708953-5708963 chr10:5709104-5709120 chr10:5709103-5709110 chr10:5708964-5708974
27	CTCF	chr10:5708760-5708910	A549	lung:	n/a	n/a
28	E2F4	chr10:5708519-5709105	MCF10A-Er-Src	breast:	n/a	chr10:5708642-5708654
29	REST	chr10:5708349-5708910	ECC-1	luminal epithelium:	n/a	chr10:5708672-5708685 chr10:5708672-5708692 chr10:5708672-5708681
30	MAX	chr10:5707768-5709232	ECC-1	luminal epithelium:	n/a	chr10:5708953-5708963 chr10:5709104-5709120 chr10:5708049-5708059 chr10:5708348-5708358 chr10:5709103-5709110 chr10:5708964-5708974
31	POLR2A	chr10:5708219-5708911	PFSK-1	brain:	n/a	n/a
32	CREB1	chr10:5708340-5708823	A549	lung:	n/a	n/a
33	POLR2A	chr10:5708028-5709030	Gliobla	brain:	n/a	n/a
34	CREB1	chr10:5708362-5708987	K562	blood:	n/a	n/a
35	ZNF143	chr10:5708456-5708845	H1-hESC	embryonic stem cell:	n/a	n/a
36	ELF1	chr10:5708447-5708827	K562	blood:	n/a	chr10:5708666-5708675
37	SIN3AK20	chr10:5708189-5708857	PANC-1	pancreas:	n/a	n/a
38	REST	chr10:5708515-5708872	PANC-1	pancreas:	n/a	chr10:5708672-5708685 chr10:5708672-5708692 chr10:5708672-5708681
39	HEY1	chr10:5708263-5708888	HepG2	liver:	n/a	chr10:5708359-5708374
40	POLR2A	chr10:5707357-5709256	Raji	blood:	n/a	n/a
41	TAF1	chr10:5707912-5708880	HepG2	liver:	n/a	n/a
42	HA-E2F1	chr10:5707838-5709142	MCF-7	breast:	n/a	chr10:5708642-5708654 chr10:5708426-5708436 chr10:5708336-5708346 chr10:5708455-5708465 chr10:5708335-5708346 chr10:5708337-5708345 chr10:5708338-5708345 chr10:5708337-5708345
43	RCOR1	chr10:5708497-5708922	HepG2	liver:	n/a	n/a
44	POLR2A	chr10:5708206-5708898	ECC-1	luminal epithelium:	n/a	n/a
45	POLR2A	chr10:5707948-5708879	MCF-7	breast:	n/a	n/a
46	SIX5	chr10:5708517-5708826	H1-hESC	embryonic stem cell:	n/a	n/a
47	NFIC	chr10:5708366-5708971	ECC-1	luminal epithelium:	n/a	n/a
48	REST	chr10:5708499-5708845	PFSK-1	brain:	n/a	chr10:5708672-5708685 chr10:5708672-5708692 chr10:5708672-5708681
49	MAX	chr10:5707631-5709274	NB4	blood:	n/a	chr10:5708953-5708963 chr10:5709104-5709120 chr10:5708049-5708059 chr10:5708348-5708358 chr10:5709103-5709110 chr10:5708964-5708974
50	E2F6	chr10:5707889-5708821	K562	blood:	n/a	chr10:5708642-5708654 chr10:5708426-5708436 chr10:5708336-5708346 chr10:5708455-5708465 chr10:5708335-5708346 chr10:5708337-5708345 chr10:5708338-5708345 chr10:5708337-5708345

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:5708765-5708815	HCPEpiC	choroid plexus:	n/a
2	chr10:5708765-5708815	HMEC	breast:	n/a
3	chr10:5708765-5708815	HRCEpiC	kidney:	n/a
4	chr10:5708797-5708847	NT2-D1	testis:	n/a
5	chr10:5708797-5708847	K562	blood:	n/a
6	chr10:5708765-5708815	SKMC	muscle:	n/a
7	chr10:5708797-5708847	Jurkat	blood:	n/a
8	chr10:5708797-5708847	PANC-1	pancreas:	n/a
9	chr10:5708765-5708815	HL-60	blood:	n/a
10	chr10:5708765-5708815	PANC-1	pancreas:	n/a
11	chr10:5708797-5708847	AG09319	gingival:	n/a
12	chr10:5708765-5708815	HEEpiC	esophagus:	n/a
13	chr10:5708797-5708847	HepG2	liver:	n/a
14	chr10:5708765-5708815	NB4	blood:	n/a
15	chr10:5708797-5708847	HEEpiC	esophagus:	n/a
16	chr10:5708765-5708815	Jurkat	blood:	n/a
17	chr10:5708797-5708847	AG09309	skin:	n/a
18	chr10:5708765-5708815	HNPCEpiC	eye:	n/a
19	chr10:5708765-5708815	AG10803	skin:	n/a
20	chr10:5708765-5708815	GM12891	blood:	n/a
21	chr10:5708797-5708847	BJ	skin:	n/a
22	chr10:5708765-5708815	SK-N-SH	brain:	n/a
23	chr10:5708765-5708815	NT2-D1	testis:	n/a
24	chr10:5708765-5708815	ECC-1	luminal epithelium:	n/a
25	chr10:5708765-5708815	HRE	kidney:	n/a
26	chr10:5708797-5708847	CMK	blood:	n/a
27	chr10:5708765-5708815	AG09319	gingival:	n/a
28	chr10:5708797-5708847	HCM	heart:	n/a
29	chr10:5708765-5708815	U87	brain:	n/a
30	chr10:5708765-5708815	HCT-116	colon:	n/a
31	chr10:5708765-5708815	PFSK-1	brain:	n/a
32	chr10:5708797-5708847	U87	brain:	n/a
33	chr10:5708797-5708847	GM12891	blood:	n/a
34	chr10:5708765-5708815	HIPEpiC	eye:	n/a
35	chr10:5708797-5708847	AG04450	lung:	fetal
36	chr10:5708797-5708847	HEK293	kidney:	embryo
37	chr10:5708797-5708847	GM06990	blood:	n/a
38	chr10:5708797-5708847	IMR90	lung:	fetal
39	chr10:5708765-5708815	NHBE	bronchial:	n/a
40	chr10:5708797-5708847	NHDF-neo	bronchial:	n/a
41	chr10:5708765-5708815	CMK	blood:	n/a
42	chr10:5708797-5708847	NH-A	brain:	n/a
43	chr10:5708797-5708847	RPTEC	kidney:	n/a
44	chr10:5708797-5708847	ECC-1	luminal epithelium:	n/a
45	chr10:5708797-5708847	SK-N-MC	brain:	n/a
46	chr10:5708765-5708815	SK-N-MC	brain:	n/a
47	chr10:5708765-5708815	HepG2	liver:	n/a
48	chr10:5708765-5708815	ProgFib	skin:	n/a
49	chr10:5708765-5708815	AG04450	lung:	fetal
50	chr10:5708797-5708847	HRCEpiC	kidney:	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:5659171..5662010-chr10:5707160..5709672,2	MCF-7	breast:
2	chr10:5707419..5708953-chr10:5931052..5933501,2	MCF-7	breast:
3	chr10:5691710..5696017-chr10:5704918..5709884,5	K562	blood:
4	chr10:5706894..5712025-chr10:5724987..5728504,7	MCF-7	breast:
5	chr10:5707719..5709670-chr10:5755550..5758097,2	MCF-7	breast:
6	chr10:5539704..5542101-chr10:5707355..5709721,2	MCF-7	breast:
7	chr10:5708731..5711725-chr10:5733293..5735227,2	MCF-7	breast:
8	chr10:5707157..5710880-chr10:5853405..5856185,3	K562	blood:
9	chr10:5691219..5693694-chr10:5706407..5709884,5	K562	blood:
10	chr10:5486439..5489849-chr10:5706503..5709188,4	MCF-7	breast:
11	chr10:5707879..5710257-chr22:29195153..29198012,2	MCF-7	breast:
12	chr10:5704788..5710194-chr10:5724908..5728833,8	K562	blood:
13	chr10:5706900..5709374-chr10:5740250..5741979,2	MCF-7	breast:
14	chr10:5708283..5708927-chr16:31470241..31471151,2	Hela-S3	cervix:
15	chr10:5708441..5709982-chr10:5853880..5856185,2	K562	blood:
16	chr10:5682936..5684955-chr10:5707223..5709652,2	MCF-7	breast:
17	chr10:5487870..5492604-chr10:5704699..5710397,11	MCF-7	breast:
18	chr10:5707177..5709381-chr10:5931479..5933432,3	MCF-7	breast:
19	chr10:5693035..5694610-chr10:5707136..5708829,2	MCF-7	breast:

Variant related genes	Relation type
ASB13	TF binding region
ASB13	CpG island
ENSG00000272764	Chromatin interaction
ENSG00000196372	Chromatin interaction
ENSG00000173848	Chromatin interaction
ENSG00000057608	Chromatin interaction
ENSG00000140691	Chromatin interaction
ENSG00000260267	Chromatin interaction
ENSG00000134452	Chromatin interaction
ENSG00000178372	Chromatin interaction
ENSG00000228951	Chromatin interaction
ENSG00000226647	Chromatin interaction
ENSG00000108021	Chromatin interaction
ENSG00000226471	Chromatin interaction
ENSG00000134461	Chromatin interaction
ENSG00000100219	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11258391	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1418737	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1418738	0.91[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2386627	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2386629	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2386630	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2386635	0.86[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2386637	0.93[ASW][hapmap];0.90[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2386638	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2386644	0.82[ASN][1000 genomes]
rs2892073	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2892074	0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2892075	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2892076	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3763698	0.93[ASW][hapmap];0.90[CEU][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.92[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3814201	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap]
rs3814202	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3814203	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4492710	0.87[EUR][1000 genomes]
rs4546989	0.91[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4592326	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5019339	0.86[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5019340	0.93[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56178329	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7076936	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7078798	0.81[EUR][1000 genomes]
rs7085382	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7097037	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7923640	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9423880	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9423887	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9423896	0.91[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9423897	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9423898	0.83[EUR][1000 genomes]
rs9423902	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9423904	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9423905	0.91[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9423906	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9423907	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9423908	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9423909	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9423910	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9423915	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9424166	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9424170	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9424171	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9424182	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9424184	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9424185	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9424186	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9424191	0.85[CEU][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9424198	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9424201	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv523491	chr10:5542109-5720067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2757364	chr10:5557024-5720512	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	esv2758209	chr10:5637111-5804780	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv519582	chr10:5646103-5720067	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv8599	chr10:5649129-5719928	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv1050965	chr10:5649760-5717125	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
9	nsv1044330	chr10:5652006-5717125	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv975791	chr10:5652225-5711077	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv466720	chr10:5652277-5715401	Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv549892	chr10:5652277-5715401	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
13	nsv1037709	chr10:5652739-5717125	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
14	nsv470917	chr10:5654167-5715401	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
15	nsv818742	chr10:5654167-5715401	Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
16	nsv1036492	chr10:5656962-5711147	Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
17	nsv540473	chr10:5656962-5711147	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
18	nsv1036253	chr10:5657162-5711008	Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
19	nsv540474	chr10:5657162-5711008	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
20	nsv1040422	chr10:5665458-5714630	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
21	nsv1043251	chr10:5665458-5716555	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
22	nsv1052519	chr10:5665458-5717125	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
23	nsv1038690	chr10:5665458-5720424	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
24	nsv1039650	chr10:5665458-5720512	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
25	nsv1041684	chr10:5665458-5722299	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
26	esv2760149	chr10:5665458-5724382	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
27	nsv1054909	chr10:5665458-5724382	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
28	nsv1049620	chr10:5665458-5725208	Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
29	nsv442170	chr10:5665462-5717127	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
30	esv2753700	chr10:5665774-5716555	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
31	esv34623	chr10:5665774-5716858	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
32	esv35082	chr10:5665774-5716858	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
33	esv2754101	chr10:5665774-5716858	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
34	esv2755272	chr10:5665774-5716858	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
35	nsv1038750	chr10:5668208-5711008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
36	nsv540475	chr10:5668208-5711008	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
37	nsv894808	chr10:5685301-5712087	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
38	nsv894809	chr10:5696482-5711220	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
39	nsv466721	chr10:5701761-5721653	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
40	nsv549893	chr10:5701761-5721653	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
41	esv3375619	chr10:5706746-5711044	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
42	nsv549894	chr10:5708801-5721653	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3814204	GDI2	cis	parietal	SCAN
rs3814204	GDI2	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5707400-5709000	Active TSS	Psoas Muscle	Psoas
2	chr10:5707400-5709200	Active TSS	Fetal Stomach	stomach
3	chr10:5707400-5709400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:5707600-5709000	Active TSS	Right Atrium	heart
5	chr10:5707600-5709200	Active TSS	HSMMtube	muscle
6	chr10:5707800-5709000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr10:5707800-5709000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:5707800-5709000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:5707800-5709000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr10:5707800-5709000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:5707800-5709200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:5708000-5709000	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:5708200-5709000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:5708200-5709000	Active TSS	Thymus	Thymus
15	chr10:5708600-5709000	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:5708600-5709000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:5708600-5709000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr10:5708600-5709000	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:5708600-5709000	Flanking Active TSS	Esophagus	oesophagus
20	chr10:5708600-5709000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
21	chr10:5708600-5709000	Flanking Active TSS	Fetal Muscle Trunk	muscle
22	chr10:5708600-5709000	Flanking Active TSS	Placenta	Placenta
23	chr10:5708600-5709000	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
24	chr10:5708600-5709000	Flanking Active TSS	Placenta Amnion	Placenta Amnion
25	chr10:5708600-5709000	Flanking Active TSS	Right Ventricle	heart
26	chr10:5708600-5709000	Flanking Active TSS	Stomach Mucosa	stomach
27	chr10:5708600-5709000	Flanking Active TSS	Osteobl	bone
28	chr10:5708600-5709200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:5708600-5709200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
30	chr10:5708600-5709200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
31	chr10:5708600-5709200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr10:5708600-5709200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr10:5708600-5709200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
34	chr10:5708600-5709200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:5708600-5709200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:5708600-5709200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:5708600-5709200	Flanking Active TSS	Adipose Nuclei	Adipose
38	chr10:5708600-5709200	Flanking Active TSS	Liver	Liver
39	chr10:5708600-5709200	Flanking Active TSS	Gastric	stomach
40	chr10:5708600-5709200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
41	chr10:5708600-5709200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr10:5708600-5709200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr10:5708600-5709200	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
44	chr10:5708600-5709200	Flanking Active TSS	HMEC	breast
45	chr10:5708600-5709200	Flanking Active TSS	NH-A	brain
46	chr10:5708600-5709400	Flanking Bivalent TSS/Enh	Dnd41	blood
47	chr10:5708600-5709600	Flanking Active TSS	HepG2	liver
48	chr10:5708600-5709600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr10:5708600-5709800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:5708800-5709000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell

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