Variant report

Variant	rs3824697
Chromosome Location	chr10:26356015-26356016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 201 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:197)

rs_ID	r²[population]
rs10508710	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10828945	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10828946	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11014928	0.81[ASN][1000 genomes]
rs11014929	0.81[ASN][1000 genomes]
rs11014931	0.81[ASN][1000 genomes]
rs11014932	0.81[ASN][1000 genomes]
rs11014933	0.81[ASN][1000 genomes]
rs11014935	0.81[ASN][1000 genomes]
rs11014936	0.81[ASN][1000 genomes]
rs11014938	0.81[ASN][1000 genomes]
rs11014939	0.81[ASN][1000 genomes]
rs11014940	0.81[ASN][1000 genomes]
rs11014944	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11014945	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11014946	0.83[AMR][1000 genomes]
rs11014947	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11014948	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11014951	0.80[AMR][1000 genomes]
rs11593128	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11595393	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11812518	0.81[AMR][1000 genomes]
rs12240279	0.81[ASN][1000 genomes]
rs12241851	0.81[ASN][1000 genomes]
rs12242258	0.81[ASN][1000 genomes]
rs12242396	0.81[ASN][1000 genomes]
rs12243741	0.81[ASN][1000 genomes]
rs12244889	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12247598	0.81[AMR][1000 genomes]
rs12248210	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12249006	0.81[ASN][1000 genomes]
rs12252825	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12253015	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12260321	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12262265	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12263561	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12263812	0.83[AMR][1000 genomes]
rs12263885	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12263998	0.81[ASN][1000 genomes]
rs12264250	0.81[ASN][1000 genomes]
rs12267071	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12569363	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12570534	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12761327	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12761590	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12765553	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12765561	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12766929	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12767114	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12767805	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12768299	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12768454	0.81[AMR][1000 genomes]
rs12768754	0.81[ASN][1000 genomes]
rs12768879	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12768930	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12769263	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12770421	0.80[ASN][1000 genomes]
rs12770618	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12771414	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12772112	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12772553	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12773390	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12773513	0.80[ASN][1000 genomes]
rs12773856	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12774889	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12775228	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12775359	0.81[AMR][1000 genomes]
rs12775421	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12776584	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12776958	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12777006	0.83[AMR][1000 genomes]
rs12779671	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12780744	0.81[AMR][1000 genomes]
rs12781231	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12781392	0.80[AMR][1000 genomes]
rs12781790	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12784526	0.81[ASN][1000 genomes]
rs12784683	0.81[ASN][1000 genomes]
rs12784717	0.81[ASN][1000 genomes]
rs12784877	0.81[ASN][1000 genomes]
rs12785093	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12785116	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1339810	0.80[ASN][1000 genomes]
rs1402436	0.81[ASN][1000 genomes]
rs1521029	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1521030	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1521031	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1521032	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1521033	0.80[AMR][1000 genomes]
rs1578218	0.81[ASN][1000 genomes]
rs1591906	0.81[ASN][1000 genomes]
rs17666328	0.81[ASN][1000 genomes]
rs17666400	0.81[ASN][1000 genomes]
rs17666458	0.81[AMR][1000 genomes]
rs17666471	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17666495	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17666501	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17738967	0.81[ASN][1000 genomes]
rs17738985	0.81[ASN][1000 genomes]
rs17739106	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2176937	0.81[AMR][1000 genomes]
rs2176942	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2368120	0.81[ASN][1000 genomes]
rs34089187	0.81[ASN][1000 genomes]
rs34135459	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34311739	0.81[ASN][1000 genomes]
rs34353852	0.81[ASN][1000 genomes]
rs34457588	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34474695	0.82[ASN][1000 genomes]
rs34580592	0.81[AMR][1000 genomes]
rs34610554	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34726667	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34756309	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34832963	0.81[AMR][1000 genomes]
rs34834344	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34879813	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34967200	0.81[AMR][1000 genomes]
rs35000419	0.81[ASN][1000 genomes]
rs35158540	0.81[ASN][1000 genomes]
rs35177483	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35251452	0.81[ASN][1000 genomes]
rs35616188	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35636005	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35853372	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3758441	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3758443	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3758444	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3817417	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3817418	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3817419	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3817421	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3824695	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3824696	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3824700	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3824701	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3824702	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3824703	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3824704	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3824705	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4313469	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4378287	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4548528	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4581343	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4581344	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4631780	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4998836	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4998838	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4998839	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4998840	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs5012431	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55752594	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs56011042	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56403024	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57335787	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58217723	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58595215	0.81[AMR][1000 genomes]
rs59180311	0.81[ASN][1000 genomes]
rs59764643	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61840796	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61840797	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61840798	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61846589	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61846590	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61849330	0.80[ASN][1000 genomes]
rs61849335	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61849336	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61849337	0.80[AMR][1000 genomes]
rs61849338	0.80[AMR][1000 genomes]
rs61849340	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61849342	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61849343	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61849344	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6482528	0.81[ASN][1000 genomes]
rs66657341	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs67216996	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7073081	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7074453	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7084483	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7095515	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7095668	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7095982	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7096274	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7097387	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7097468	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs71492528	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73610386	0.81[ASN][1000 genomes]
rs7894273	0.80[AMR][1000 genomes]
rs7894301	0.81[ASN][1000 genomes]
rs7899880	0.81[AMR][1000 genomes]
rs7901158	0.81[ASN][1000 genomes]
rs7906251	0.81[AMR][1000 genomes]
rs7910497	0.81[ASN][1000 genomes]
rs7913733	0.81[AMR][1000 genomes]
rs7914972	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7915315	0.81[ASN][1000 genomes]
rs7916320	0.81[AMR][1000 genomes]
rs7917879	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv13963	chr10:26345494-26361303	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3340579	chr10:26354071-26356094	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26352800-26358400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26355800-26356800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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