Variant report

Variant	rs3825844
Chromosome Location	chr15:78910325-78910326
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3743076	0.99[ASN][1000 genomes]
rs4243084	0.85[ASN][1000 genomes]
rs60958974	0.89[ASN][1000 genomes]
rs71541945	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1045827	chr15:78907656-79004642	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv457208	chr15:78908032-79019610	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv570201	chr15:78908032-79019610	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78894200-78910600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:78906200-78910600	Strong transcription	Fetal Thymus	thymus
3	chr15:78909000-78910600	Genic enhancers	Stomach Smooth Muscle	stomach
4	chr15:78909000-78910800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr15:78909600-78910800	Enhancers	Adipose Nuclei	Adipose
6	chr15:78909600-78910800	Enhancers	HMEC	breast
7	chr15:78909600-78911000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:78910000-78910400	Enhancers	Placenta	Placenta
9	chr15:78910000-78910800	Genic enhancers	Thymus	Thymus
10	chr15:78910000-78911200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:78910000-78911200	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr15:78910000-78911200	Enhancers	HSMM	muscle
13	chr15:78910000-78912600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr15:78910200-78910400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:78910200-78910400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:78910200-78910400	Weak transcription	Fetal Stomach	stomach
17	chr15:78910200-78912200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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