Variant report

Variant	rs60958974
Chromosome Location	chr15:78919754-78919755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16969914	1.00[AMR][1000 genomes]
rs3743076	0.88[ASN][1000 genomes]
rs3825844	0.89[ASN][1000 genomes]
rs56818859	1.00[AMR][1000 genomes]
rs57996982	1.00[AMR][1000 genomes]
rs59737941	1.00[AMR][1000 genomes]
rs59778788	1.00[AMR][1000 genomes]
rs71537686	1.00[AMR][1000 genomes]
rs71541945	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1045827	chr15:78907656-79004642	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv457208	chr15:78908032-79019610	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv570201	chr15:78908032-79019610	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv570202	chr15:78915245-78953785	Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78914800-78921600	Enhancers	Fetal Thymus	thymus
2	chr15:78915000-78929600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:78918000-78925200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:78918200-78921200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:78918600-78933000	Weak transcription	Fetal Kidney	kidney
6	chr15:78918800-78919800	Enhancers	Thymus	Thymus
7	chr15:78918800-78919800	Weak transcription	NHEK	skin
8	chr15:78918800-78921600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:78918800-78932600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:78919000-78921400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr15:78919200-78922400	Strong transcription	Fetal Stomach	stomach
12	chr15:78919400-78919800	Enhancers	Fetal Brain Female	brain
13	chr15:78919400-78920000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:78919600-78920000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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