Variant report

Variant	rs71541945
Chromosome Location	chr15:78888848-78888849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78882992..78885347-chr15:78887444..78889243,2	K562	blood:
2	chr15:78856606..78859221-chr15:78887185..78889989,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169684	Chromatin interaction
ENSG00000261762	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12914385	0.86[ASN][1000 genomes]
rs16969914	1.00[AMR][1000 genomes]
rs17486278	0.81[ASN][1000 genomes]
rs3743076	0.88[ASN][1000 genomes]
rs3825844	0.88[ASN][1000 genomes]
rs56077333	0.84[ASN][1000 genomes]
rs56818859	1.00[AMR][1000 genomes]
rs57996982	1.00[AMR][1000 genomes]
rs59737941	1.00[AMR][1000 genomes]
rs59778788	1.00[AMR][1000 genomes]
rs60958974	1.00[AMR][1000 genomes]
rs71537686	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78868000-78895800	Weak transcription	GM12878-XiMat	blood
2	chr15:78877800-78890400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:78880200-78893400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:78880200-78893800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:78880200-78897400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:78881600-78893200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:78883000-78891000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:78883000-78896000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:78883000-78896600	Weak transcription	A549	lung
10	chr15:78883200-78889200	Weak transcription	Hela-S3	cervix
11	chr15:78883200-78893600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:78883400-78891400	Weak transcription	Fetal Stomach	stomach
13	chr15:78883400-78897800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:78883600-78893800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr15:78883800-78895000	Weak transcription	Fetal Intestine Small	intestine
16	chr15:78884200-78893200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:78884400-78901000	Strong transcription	Thymus	Thymus
18	chr15:78884600-78895600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:78884600-78898600	Strong transcription	Fetal Thymus	thymus
20	chr15:78885400-78889000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:78886200-78896400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr15:78886400-78893800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr15:78886800-78894000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:78887400-78893600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:78888200-78895400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:78888200-78895800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr15:78888400-78897200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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