Variant report

Variant	rs38259
Chromosome Location	chr7:14310025-14310026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11974745	0.85[CHB][hapmap]
rs17168017	0.84[CHB][hapmap]
rs17168019	0.85[CHB][hapmap]
rs38260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38280	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs38281	0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs38282	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs38288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4141103	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6461079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73069646	0.82[AMR][1000 genomes]
rs73069647	0.82[AMR][1000 genomes]
rs73069648	0.82[AMR][1000 genomes]
rs73069655	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14306000-14310400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:14306000-14310600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:14307000-14311000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:14308600-14312000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:14308600-14312600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:14309000-14313800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:14309800-14310600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:14309800-14311200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:14309800-14311600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:14309800-14311800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:14309800-14311800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:14309800-14311800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:14310000-14310200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:14310000-14312000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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