Variant report

Variant	rs38288
Chromosome Location	chr7:14297511-14297512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs38259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs38260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs38280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs38281	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs38282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4141103	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6461079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73069646	0.82[AMR][1000 genomes]
rs73069647	0.82[AMR][1000 genomes]
rs73069648	0.82[AMR][1000 genomes]
rs73069655	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv8054	chr7:14294529-14299547	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14292400-14299400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14295400-14298000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:14297200-14298800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:14297400-14300600	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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