Variant report

Variant	rs73069646
Chromosome Location	chr7:14291748-14291749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10261697	0.93[ASN][1000 genomes]
rs17766630	1.00[AFR][1000 genomes]
rs38259	0.82[AMR][1000 genomes]
rs38260	0.82[AMR][1000 genomes]
rs38280	0.82[AMR][1000 genomes]
rs38282	0.82[AMR][1000 genomes]
rs38288	0.82[AMR][1000 genomes]
rs4141103	0.82[AMR][1000 genomes]
rs6461079	0.82[AMR][1000 genomes]
rs73069645	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73069647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73069648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73069652	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73069654	1.00[AFR][1000 genomes]
rs73069655	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1025437	chr7:14226741-14295671	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
3	nsv1033406	chr7:14258197-14294745	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14290800-14292000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr7:14290800-14293400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:14291200-14291800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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