Variant report

Variant	rs3826330
Chromosome Location	chr17:38150236-38150237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38137253..38140627-chr17:38150200..38152697,4	MCF-7	breast:
2	chr17:38139073..38144871-chr17:38149897..38154984,7	K562	blood:
3	chr17:38142013..38147565-chr17:38148653..38154078,9	K562	blood:
4	chr17:38149292..38151319-chr17:38159650..38161294,2	K562	blood:

Variant related genes	Relation type
ENSG00000108344	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1042657	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10852937	0.86[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs11652139	1.00[YRI][hapmap]
rs12938879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2071369	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs2071370	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2227324	0.86[EUR][1000 genomes]
rs2227338	0.88[EUR][1000 genomes]
rs2302775	0.86[CHB][hapmap]
rs3816471	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3859190	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3916061	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4795411	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4795417	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4795421	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6503532	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8068253	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs921651	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9748108	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9899955	0.88[EUR][1000 genomes]
rs9900199	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9903987	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9905305	0.90[ASN][1000 genomes]
rs9913632	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38138600-38154200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr17:38139200-38151400	Strong transcription	NHEK	skin
3	chr17:38139200-38154800	Strong transcription	Fetal Intestine Small	intestine
4	chr17:38139400-38152200	Strong transcription	K562	blood
5	chr17:38139400-38154400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr17:38139400-38155000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr17:38139600-38151200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr17:38139600-38153600	Strong transcription	HUVEC	blood vessel
9	chr17:38139600-38154400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr17:38139600-38154600	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr17:38139600-38154800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr17:38139600-38155000	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr17:38139600-38155200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr17:38139600-38155400	Strong transcription	Placenta	Placenta
15	chr17:38139600-38155600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr17:38139600-38155600	Strong transcription	Fetal Thymus	thymus
17	chr17:38139800-38153800	Strong transcription	Osteobl	bone
18	chr17:38139800-38154400	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr17:38139800-38154400	Strong transcription	HMEC	breast
20	chr17:38139800-38154600	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr17:38139800-38154600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr17:38139800-38154800	Strong transcription	Primary B cells from peripheral blood	blood
23	chr17:38139800-38155000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr17:38139800-38155000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr17:38139800-38155000	Strong transcription	A549	lung
26	chr17:38139800-38155600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr17:38140000-38150400	Strong transcription	Fetal Muscle Trunk	muscle
28	chr17:38140000-38150400	Strong transcription	Fetal Muscle Leg	muscle
29	chr17:38140000-38151200	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr17:38140000-38152400	Strong transcription	Adipose Nuclei	Adipose
31	chr17:38140000-38153800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr17:38140000-38153800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
33	chr17:38140000-38154200	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr17:38140000-38154200	Strong transcription	Brain Germinal Matrix	brain
35	chr17:38140000-38154200	Strong transcription	Lung	lung
36	chr17:38140000-38154400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr17:38140000-38154400	Strong transcription	Right Ventricle	heart
38	chr17:38140000-38154600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr17:38140000-38154600	Strong transcription	H9 Cell Line	embryonic stem cell
40	chr17:38140000-38154600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr17:38140000-38154600	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr17:38140000-38154600	Strong transcription	Brain Hippocampus Middle	brain
43	chr17:38140000-38154600	Strong transcription	Duodenum Mucosa	Duodenum
44	chr17:38140000-38154600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr17:38140000-38154600	Strong transcription	Fetal Intestine Large	intestine
46	chr17:38140000-38155000	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr17:38140000-38155000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr17:38140000-38155000	Strong transcription	Rectal Smooth Muscle	rectum
49	chr17:38140000-38155000	Strong transcription	HSMM	muscle
50	chr17:38140000-38155200	Strong transcription	Placenta Amnion	Placenta Amnion

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