Variant report

Variant	rs9900199
Chromosome Location	chr17:38157355-38157356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1042657	0.87[EUR][1000 genomes]
rs12938879	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2071369	0.82[EUR][1000 genomes]
rs2071370	0.87[EUR][1000 genomes]
rs2227324	0.81[EUR][1000 genomes]
rs2227338	0.82[EUR][1000 genomes]
rs3816471	0.89[ASN][1000 genomes]
rs3826330	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3859190	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3916061	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4795411	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4795417	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4795421	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6503532	0.87[EUR][1000 genomes]
rs8068253	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs921651	0.83[ASN][1000 genomes]
rs9748108	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9899955	0.82[EUR][1000 genomes]
rs9903987	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9905305	0.85[ASN][1000 genomes]
rs9913632	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv908220	chr17:38153473-38175426	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38147400-38157400	Weak transcription	Fetal Brain Male	brain
2	chr17:38152200-38160600	Weak transcription	Psoas Muscle	Psoas
3	chr17:38152200-38160800	Weak transcription	K562	blood
4	chr17:38153200-38158400	Weak transcription	Fetal Kidney	kidney
5	chr17:38153200-38166400	Weak transcription	Fetal Lung	lung
6	chr17:38153400-38158000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr17:38153400-38166200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr17:38153400-38166600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr17:38153600-38160400	Weak transcription	HSMMtube	muscle
10	chr17:38153600-38160600	Weak transcription	Stomach Mucosa	stomach
11	chr17:38153800-38160600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr17:38153800-38166200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr17:38153800-38166200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr17:38153800-38172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr17:38154200-38157400	Weak transcription	Brain Germinal Matrix	brain
16	chr17:38154200-38161000	Weak transcription	Lung	lung
17	chr17:38154200-38166400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr17:38154400-38157400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr17:38154400-38157600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr17:38154400-38157800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr17:38154400-38157800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr17:38154400-38158400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr17:38154400-38158800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr17:38154400-38160400	Weak transcription	HepG2	liver
25	chr17:38154400-38166200	Weak transcription	Dnd41	blood
26	chr17:38154400-38166400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr17:38154600-38158000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr17:38154600-38160800	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr17:38154600-38166200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr17:38154600-38166400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr17:38154600-38170000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr17:38154600-38170200	Weak transcription	Esophagus	oesophagus
33	chr17:38154800-38157800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr17:38154800-38158800	Weak transcription	Fetal Intestine Small	intestine
35	chr17:38154800-38159200	Weak transcription	Primary B cells from peripheral blood	blood
36	chr17:38154800-38173600	Weak transcription	Thymus	Thymus
37	chr17:38155000-38157400	Weak transcription	Colon Smooth Muscle	Colon
38	chr17:38155000-38157400	Weak transcription	A549	lung
39	chr17:38155000-38157600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr17:38155000-38157600	Weak transcription	Brain Anterior Caudate	brain
41	chr17:38155000-38158000	Weak transcription	Primary T cells from cord blood	blood
42	chr17:38155000-38158400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr17:38155000-38158800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr17:38155000-38158800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr17:38155000-38160600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr17:38155000-38160600	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr17:38155000-38166200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr17:38155000-38166400	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr17:38155000-38170000	Weak transcription	HSMM	muscle
50	chr17:38155000-38173600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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